Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0547
(472 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 6e-31
SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0) 28 3.4
SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068) 28 3.4
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 28 4.5
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 27 5.9
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 27 5.9
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34) 27 7.8
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 130 bits (314), Expect = 6e-31
Identities = 58/78 (74%), Positives = 69/78 (88%)
Frame = +3
Query: 18 EVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 197
+V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP V
Sbjct: 26 KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85
Query: 198 HSRARVRKNTEARRKGRH 251
HSRARVRK EAR KGRH
Sbjct: 86 HSRARVRKADEARSKGRH 103
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/75 (57%), Positives = 49/75 (65%)
Frame = +2
Query: 239 KGSSLCFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 418
KG GKR+GTANARMPQK +W AKKID H+YHSLYMK+KGNV
Sbjct: 100 KGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNV 159
Query: 419 FXNXXVLMEYIHRKE 463
F N VLMEYIH+K+
Sbjct: 160 FKNKRVLMEYIHKKK 174
>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 327 TLCLCTHSSFCGIRALAVPLLLPKHSDDPFYVPLCFCGHG 208
TLC+ H S C L + L + HS + LC GHG
Sbjct: 408 TLCIGGHGSAC----LTITLCIGGHSSACLTITLCIGGHG 443
>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 153 KMIKD-GLVIKKPVAVHSRARVRKNTEARRKGRHCALVREEVLPMRV 290
K++++ GL+ + V RA + + +E R+K R CA + + LP+R+
Sbjct: 449 KLLQELGLLRDEAYRVEDRAALAQVSELRKKLRECAPLDKSGLPLRL 495
>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
Length = 816
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 60 ASVMRCGKKKVWLDP-NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEAR 236
A+V G ++ +P EINE ANT + I + +G V+ +PV V V+K +R
Sbjct: 507 AAVDELGLEEALQEPVPEINETANTTNELTIVQNEMEGFVL-EPVEV-----VQKGKRSR 560
Query: 237 RKGRHCALVREEVLPMRV 290
RK R + E++L V
Sbjct: 561 RK-RKLIVDEEKILSTEV 577
>SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)
Length = 245
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 153 KMIKD-GLVIKKPVAVHSRARVRKNTEARRKGRHCALVREEVLPMRV 290
K++++ GL+ + V RA + + +E R+K R CA + + LP+R+
Sbjct: 143 KLLQELGLLRDEAYRVEDRAALAQVSELRKKLRECAPLDKSGLPLRL 189
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 380 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 279
D + S Q C FLEP VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 132 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCALVRE 269
+S NIRK IKDG K P S +VRK + RR + + V++
Sbjct: 95 SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKK 142
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 85 FLPHRITEAASLFCSL-RELILTSCRI 8
+ PH I E +LFCS+ ELI C I
Sbjct: 154 YCPHHIGERLALFCSICDELICRECAI 180
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 395 RVSGIDACQSSWQFCTSGAIFLEPFVF 315
RV+G+ S WQ CT+ A L+ VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519
>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
Length = 225
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 282 LAVPLLLPKHSDDPFYVPLCFCGHGRGSGL 193
+AV P+ +D+P +VPL G RGS L
Sbjct: 191 IAVVKQCPRGTDEPSFVPLMKTGFDRGSYL 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,588
Number of Sequences: 59808
Number of extensions: 348939
Number of successful extensions: 860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -