Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0547
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   116   9e-27
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    36   0.015
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical p...    28   2.9  
AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z37983-10|CAA86060.4|  267|Caenorhabditis elegans Hypothetical p...    27   9.0  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   9.0  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  116 bits (279), Expect = 9e-27
 Identities = 49/75 (65%), Positives = 66/75 (88%)
 Frame = +3

Query: 27  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 207 ARVRKNTEARRKGRH 251
            R R+  EARRKGRH
Sbjct: 61  FRAREYEEARRKGRH 75



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 38/75 (50%), Positives = 47/75 (62%)
 Frame = +2

Query: 239 KGSSLCFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 418
           KG    +GKRRGTANARMP+K LW                AKK+D+HLYH LY++AKGN 
Sbjct: 72  KGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNN 131

Query: 419 FXNXXVLMEYIHRKE 463
           F N   L+EYI +K+
Sbjct: 132 FKNKKNLIEYIFKKK 146


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -3

Query: 338 IFLEPFVFVPIVPSVAYAHWQYLF-SYQSTVTTLSTCLCVFADTGAGVDCYRFLDDETIL 162
           IF+EPF    IV    +  W+  F ++   +  ++T  C+FAD  +     R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFAD-ASPAKWTRLQDDDVAI 460

Query: 161 DHLTDVLSGVGVCDLIDFI 105
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 123  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGR 248
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVR 1096


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 135 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 248
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 317 FVPIVPSVAYAHWQYLFSYQSTVTTL 240
           F+ IVP+  Y ++ Y  +YQ +VT L
Sbjct: 300 FIKIVPTKIYGYFSYTMAYQYSVTFL 325


>AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 317 FVPIVPSVAYAHWQYLFSYQSTVTTL 240
           F+ IVP+  Y ++ Y  +YQ +VT L
Sbjct: 300 FIKIVPTKIYGYFSYTMAYQYSVTFL 325


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 51  RLAASVMRCGKKKVWLDPNEI 113
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>Z37983-10|CAA86060.4|  267|Caenorhabditis elegans Hypothetical
           protein B0393.7 protein.
          Length = 267

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 281 WQYLFSYQSTVTTLSTCLCVFA 216
           WQ++ +YQ T     T  CVFA
Sbjct: 104 WQHICAYQGTYKCAKTMNCVFA 125


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 247 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 95
           RP   AS F + RA  W A+  ++  P+L+ ++ F   ++  ++ + + +N
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTFQSIIIAILTGLVYTNN 312


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 247 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 95
           RP   AS F + RA  W A+  ++  P+L+ ++ F   ++  ++ + + +N
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTFQSIIIAILTGLVYTNN 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,780
Number of Sequences: 27780
Number of extensions: 248841
Number of successful extensions: 648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)