Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0547
(472 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 116 8e-27
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 114 2e-26
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 113 4e-26
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 39 0.001
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 29 1.6
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 29 2.1
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 2.8
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 3.7
At5g24410.1 68418.m02877 glucosamine/galactosamine-6-phosphate i... 27 6.4
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 116 bits (279), Expect = 8e-27
Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
Frame = +3
Query: 27 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 207 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 302
+R R EA+RKGRH RE LP ++ R
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMR 97
Score = 77.8 bits (183), Expect = 3e-15
Identities = 36/73 (49%), Positives = 43/73 (58%)
Frame = +2
Query: 239 KGSSLCFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 418
KG +GKR+GT AR+P K LW +KKIDRH+YH +YMK KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNV 131
Query: 419 FXNXXVLMEYIHR 457
F N VLME IH+
Sbjct: 132 FKNKRVLMESIHK 144
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 114 bits (275), Expect = 2e-26
Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
Frame = +3
Query: 27 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 207 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 302
+R RK A+ KGRH RE LP +V R
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMR 97
Score = 75.8 bits (178), Expect = 1e-14
Identities = 34/75 (45%), Positives = 43/75 (57%)
Frame = +2
Query: 239 KGSSLCFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 418
KG +GKR+GT AR+P K LW KKID+H+YH +YM+ KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNV 131
Query: 419 FXNXXVLMEYIHRKE 463
F N VLME IH+ +
Sbjct: 132 FKNKRVLMESIHKSK 146
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 113 bits (273), Expect = 4e-26
Identities = 55/97 (56%), Positives = 71/97 (73%), Gaps = 5/97 (5%)
Frame = +3
Query: 27 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 207 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 302
+R R+ A+RKGRH RE LP +V R
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMR 97
Score = 78.2 bits (184), Expect = 3e-15
Identities = 36/75 (48%), Positives = 43/75 (57%)
Frame = +2
Query: 239 KGSSLCFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 418
KG +GKR+GT AR+P K LW KKIDRH+YH +YMK KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNV 131
Query: 419 FXNXXVLMEYIHRKE 463
F N VLME IH+ +
Sbjct: 132 FKNKRVLMESIHKSK 146
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2
Query: 362 KKIDRHLY-HSLYMKAKGNVFXNXXVLMEYIHR 457
KKID+ +Y H ++MK KG V+ N VLME +H+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHK 61
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 128 VCDLIDFIWIQPHLLFTT--SHNRGCKPLLQLEGTHPDLVPN 9
+C+ D W+ H+L ++ +H+R L+ +P L+PN
Sbjct: 109 LCEGGDVFWVLIHILLSSIHTHDRASNLLVMFVSNNPTLIPN 150
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 18 EVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 170
E + S+ L++ AS+ K++ + N +EIA T+ Q+ K KDG
Sbjct: 246 ETKCSTPGLKRSWEASLSSLQSKRIRANNNNNSEIAKTDLAQSSAKQSKDG 296
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 103 GSNHTFFLPHRITEAASLFCSLRELILTSC 14
G+N+ F R+ AS FC+LR LI SC
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI-DSC 326
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 187 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 92
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g24410.1 68418.m02877 glucosamine/galactosamine-6-phosphate
isomerase-related contains weak similarity to
Swiss-Prot:O95336 6-phosphogluconolactonase (EC
3.1.1.31) (6PGL) [Homo sapiens]
Length = 261
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 153 KMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCALVREEVLPMRVCHRRNYGYKDKGF 329
K+ DG + K P+ + + + K+ A + AL+ EE L V YK GF
Sbjct: 93 KLAFDGFLSKVPIPIANIYPIDKDCAALGDAKSAALLYEECLKRLVNRNIIRTYKSSGF 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,901,075
Number of Sequences: 28952
Number of extensions: 236228
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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