Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0544
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   136   1e-33
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    73   2e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    73   3e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    65   5e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    46   4e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    45   8e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    37   0.002
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    31   0.14 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   2.9  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   3.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   3.9  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   9.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.0  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  136 bits (330), Expect = 1e-33
 Identities = 64/87 (73%), Positives = 68/87 (78%)
 Frame = +2

Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
           G +  YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48  GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107

Query: 422 AXLNPXANXREDDPXHVSKHSTTPALY 502
           A LNP +N RE     + +    PA Y
Sbjct: 108 APLNPKSN-REKMTQIIFETFNAPAFY 133



 Score =  104 bits (250), Expect = 7e-24
 Identities = 45/50 (90%), Positives = 49/50 (98%)
 Frame = +3

Query: 105 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKD 51


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
 Frame = +2

Query: 257 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAXLN 433
           +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PEEHP+LLTE    
Sbjct: 57  FVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP--- 113

Query: 434 PXANXREDD 460
           P AN R  +
Sbjct: 114 PLANIRNKE 122



 Score = 58.8 bits (136), Expect = 4e-10
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +3

Query: 123 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 27/62 (43%), Positives = 47/62 (75%)
 Frame = +2

Query: 260 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAXLNPX 439
           VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE  +NP 
Sbjct: 54  VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113

Query: 440 AN 445
           AN
Sbjct: 114 AN 115



 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 111 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 215
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +2

Query: 257 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAXLN 433
           ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE  LN
Sbjct: 75  FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134

Query: 434 PXAN 445
           P  N
Sbjct: 135 PPEN 138



 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +3

Query: 123 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 206
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +2

Query: 293 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAXLNPXAN 445
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  N
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPEN 113



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 108 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 209
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +2

Query: 227 RDGRYGTEGPYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 403
           RD +       VG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EH
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116

Query: 404 PVLLTEAXLNP 436
           P+ +TE   NP
Sbjct: 117 PICMTEPLANP 127



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 123 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 218
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 108 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 209
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 257 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAXL 430
           YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE   
Sbjct: 52  YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111

Query: 431 NP 436
           NP
Sbjct: 112 NP 113


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -1

Query: 340 IPVSDDSVFDGVFEGQDTSFALCLVSYVRSFCPIPTITP*WRGLPTIEGNTARGASSPAK 161
           +P  + +V        +TSFAL   S   S    PT +      P +E +    +S+PA 
Sbjct: 63  LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122

Query: 160 PALHIP 143
           P L+ P
Sbjct: 123 PQLNSP 128


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -1

Query: 238 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 104
           PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 244 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 152
           P+PT  P    LPT   NT +    P+ PAL
Sbjct: 74  PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 353 IWHHT--FYNELRVAPEEHPVLLTEAXLNPXANXREDDPXHVSKHSTTP 493
           +W++T    N+L V P  +P+L TE  + P A      P +    + TP
Sbjct: 46  VWNYTSTLSNKLPV-PSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTP 93


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 308 PIEHGIVTNWDDMEKIWHHTF 370
           PI+ G V +W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 387 SPPRNTLSCSLRLPSTPXPTXEKMTXIMFRN 479
           SPP++T   S R PS P  + EK + +  +N
Sbjct: 285 SPPQSTRPSSTRFPSVPL-SDEKNSIVSVKN 314


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 LVVDNGSGMCKAGFAG 170
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 168 GDDAPRAVFPSIVGRPRHQGVMVGM 242
           G+  PRA F  ++  P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 323 IVTNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAXLNP 436
           ++ + DD    +W+  HTF+++ +  P EH + ++++ +NP
Sbjct: 271 VIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,867
Number of Sequences: 5004
Number of extensions: 45285
Number of successful extensions: 122
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)