Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0544
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_56| Best HMM Match : Actin (HMM E-Value=0) 142 2e-34
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 142 2e-34
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 9e-24
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 5e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 54 9e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 5e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 35 0.035
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.061
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 33 0.14
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 33 0.19
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 33 0.19
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.19
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 32 0.25
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.43
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 31 0.75
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 31 0.75
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 31 0.75
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 31 0.75
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 31 0.75
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 31 0.75
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 31 0.75
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 29 2.3
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.3
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 2.3
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 29 2.3
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015) 29 2.3
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.3
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_46483| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.3
SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.3
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 27 7.0
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 9.3
SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07) 27 9.3
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 142 bits (344), Expect = 2e-34
Identities = 67/87 (77%), Positives = 72/87 (82%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 422 AXLNPXANXREDDPXHVSKHSTTPALY 502
A LNP AN RE + + +PA+Y
Sbjct: 109 APLNPKAN-REKMTQIMFETFNSPAMY 134
Score = 108 bits (259), Expect = 3e-24
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = +3
Query: 99 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 142 bits (344), Expect = 2e-34
Identities = 67/87 (77%), Positives = 72/87 (82%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 422 AXLNPXANXREDDPXHVSKHSTTPALY 502
A LNP AN RE + + +PA+Y
Sbjct: 108 APLNPKAN-REKMTQIMFETFNSPAMY 133
Score = 105 bits (252), Expect = 2e-23
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +3
Query: 105 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 142 bits (344), Expect = 2e-34
Identities = 67/87 (77%), Positives = 72/87 (82%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 422 AXLNPXANXREDDPXHVSKHSTTPALY 502
A LNP AN RE + + +PA+Y
Sbjct: 108 APLNPKAN-REKMTQIMFETFNSPAMY 133
Score = 106 bits (255), Expect = 9e-24
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = +3
Query: 105 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 142 bits (344), Expect = 2e-34
Identities = 67/87 (77%), Positives = 72/87 (82%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 422 AXLNPXANXREDDPXHVSKHSTTPALY 502
A LNP AN RE + + +PA+Y
Sbjct: 109 APLNPKAN-REKMTQIMFETFNSPAMY 134
Score = 112 bits (270), Expect = 1e-25
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = +3
Query: 99 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 142 bits (344), Expect = 2e-34
Identities = 67/87 (77%), Positives = 72/87 (82%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 421
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 422 AXLNPXANXREDDPXHVSKHSTTPALY 502
A LNP AN RE + + +PA+Y
Sbjct: 109 APLNPKAN-REKMTQIMFETFNSPAMY 134
Score = 108 bits (259), Expect = 3e-24
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +3
Query: 99 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 106 bits (255), Expect = 9e-24
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +3
Query: 105 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 254
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
Score = 80.6 bits (190), Expect = 7e-16
Identities = 36/43 (83%), Positives = 37/43 (86%)
Frame = +2
Query: 242 GTEGPYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 370
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAXLNP 436
VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE LNP
Sbjct: 57 VGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNP 116
Query: 437 XAN 445
N
Sbjct: 117 MKN 119
Score = 45.2 bits (102), Expect = 3e-05
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Frame = +3
Query: 117 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP-RHQGVMVG------MGQKDRT*ETRH 275
+ +V DNG+G K G+AG + P +FPS+VGRP VG + D + R+
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 276 RAKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTLSCSLRLPSTPXPTXEK 455
+ + + FG S M+ PRNT P P EK
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFG--ESKMNI--DPRNTKVLLTEPPLNPMKNREK 122
Query: 456 MTXIMFRNIQ 485
M +MF N Q
Sbjct: 123 MIEVMFENYQ 132
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 108 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 224
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 224
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +2
Query: 350 KIWHHTFYNELRVAPEEHPVLLTEAXLNPXANXREDDPXHVSKHSTTPALY 502
K+W H F ++LRV E+ PVLLTEA LNP N RE + + P +Y
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMN-RERMVQLMFESFNVPCMY 2178
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 53.6 bits (123), Expect = 9e-08
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = +2
Query: 257 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 415
++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 285 FIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 93 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 239
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 221 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 105
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 35.9 bits (79), Expect = 0.020
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 224 GRDGRYGTEGPYVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 394
GR G + G VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 395 EEHPVLLTEAXLNP 436
HPV++TE NP
Sbjct: 165 VNHPVIMTEPVCNP 178
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 35.1 bits (77), Expect = 0.035
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 308 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAXLN 433
PI+ G++ +WD EKI + + ++ HP+L++EA N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWN 44
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.061
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 257 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 379
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 111 EVAALVVDNGSGMCKAGFAGDDAPRAV 191
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -1
Query: 313 DGVFEGQDTSFALCLVSYVRSFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPL 134
DG F+L L + +R + + W GNT R PAKPAL++P P
Sbjct: 41 DGEMRAILNDFSLPLDAKIRHYNRVSNQYLKWLQQLKDGGNTNRRTRIPAKPALNLPSPP 100
Query: 133 STT 125
S T
Sbjct: 101 SKT 103
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 280 ALCLVSYVRSFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 125
+L L + +R + + P W GNT R PAKP+L++P P S T
Sbjct: 512 SLPLDAKIRHYNRLSNQYPKWLQQVKDGGNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 196 GNTARGASSPAKPALHIPEPLSTT 125
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 398 EHPVLLTEAXLNPXANXREDDPXHVSKHSTTPALY 502
+HPVLLTEA LNP N RE + PAL+
Sbjct: 126 QHPVLLTEAPLNPRRN-REKAAEVFFETFNVPALF 159
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 209
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 117
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 116 NFFVAHLE 93
V L+
Sbjct: 152 QVDVLLLD 159
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 117
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 116 NFFVAHLE 93
V L+
Sbjct: 152 QVDVLLLD 159
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -3
Query: 281 CSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNF 111
C ++++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 465 CLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQV 523
Query: 110 FVAHLE 93
V L+
Sbjct: 524 DVLLLD 529
>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 221
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 117
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 126 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 184
Query: 116 NFFVAHLE 93
V L+
Sbjct: 185 QVDVLLLD 192
>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
Length = 224
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 117
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 43 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 101
Query: 116 NFFVAHLE 93
V L+
Sbjct: 102 QVDVLLLD 109
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 117
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 715 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 773
Query: 116 NFFVAHLE 93
V L+
Sbjct: 774 QVDVLLLD 781
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -2
Query: 267 SPTYGPSVPYRPSRPDGGAFPRSRGTRREEHH---LLRNRPCTYRSHCLLPTRQLLRR 103
+P Y PS P RP P + + LL RP TYR+ LP+ LL +
Sbjct: 130 APLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 117
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 799 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 857
Query: 116 NFFVAHLE 93
V L+
Sbjct: 858 QVDVLLLD 865
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 196 GNTARGASSPAKPALHIPEPLSTT 125
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 196 GNTARGASSPAKPALHIPEPLSTT 125
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_46483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 129 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 172
>SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 931
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 470 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 513
>SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 411
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 78 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 121
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 1196 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 1239
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 1860 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 1903
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 180 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 223
>SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 70 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 113
>SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 148 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 191
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 153
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 209 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 252
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 206 GKAPPSGRDGRYGTEGP 256
G+A PSGR+G GT GP
Sbjct: 163 GEAGPSGRNGANGTAGP 179
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 211 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 101
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 287 LFCSVPRLLRTVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 144
L C + + ++LSH + H L +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 368 FYNELRVAPEEHPVLLTEAXLNPXANXREDDPXHVSKHSTTPALYR 505
++ + ++A ++P +LTE N R HV+ TT A+YR
Sbjct: 26 YWLDRQIASADYPAMLTERQHNAVYRDRS----HVTNRETTNAVYR 67
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 117 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 221
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)
Length = 187
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 515 LNADGTXRALLNVSKHDXGHLLSCWXW 435
+N +G A + KHD G+ S W W
Sbjct: 47 INYNGAPVARFSTKKHDEGYYPSYWRW 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,250,188
Number of Sequences: 59808
Number of extensions: 403988
Number of successful extensions: 1266
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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