Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0543
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    75   6e-15
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   5.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   8.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 74.9 bits (176), Expect = 6e-15
 Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
 Frame = +1

Query: 82  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 255
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 256 II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPHFHLISAHRGRSVDLAXFSLHLAGISS 435
               F   PP L       L +          P    I++H G ++DLA  SL L GISS
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISS 164

Query: 436 IXGAXNXITTII 471
             G+ N I T+I
Sbjct: 165 TLGSVNLIATMI 176


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 272 TPTPLPYIINFKKNCRKWCRNRMNS 346
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 94  DFLIQLELKVLKMFQL 47
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,874
Number of Sequences: 5004
Number of extensions: 23695
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)