Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0541
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 101 3e-22
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 70 2e-12
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 59 3e-09
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 54 6e-08
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 53 2e-07
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 48 4e-06
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 40 0.001
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 38 0.006
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 35 0.042
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 35 0.055
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 33 0.22
03_02_0267 + 6990674-6990890,6991692-6991761,6991824-6991913,699... 32 0.30
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 31 0.52
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 31 0.68
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 31 0.90
07_01_0075 - 558829-560859 30 1.6
06_01_0668 - 4882174-4884204 30 1.6
10_08_0842 - 20954712-20957738 29 2.1
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362... 29 2.7
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 28 4.8
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 28 4.8
06_01_0930 - 7181514-7181756,7181847-7181903,7182656-7182859,718... 28 6.3
08_02_1489 + 27490143-27490365,27490731-27490732,27491606-274916... 27 8.4
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 27 8.4
03_03_0070 - 14256143-14257492 27 8.4
02_05_1162 - 34593101-34594624 27 8.4
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 101 bits (243), Expect = 3e-22
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVA 190
PNVGKSS+INSL RS+ NVGSTPGVT+ MQ VQLD K+K+LD PG+V S +VA
Sbjct: 277 PNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKKVKLLDCPGVVMLKSSNSGVSVA 336
Query: 191 LKNAIRVGSLKDPVTPATAIL 253
L+N RV ++DP++P IL
Sbjct: 337 LRNCKRVEKMEDPISPVKEIL 357
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/66 (43%), Positives = 43/66 (65%)
Frame = +1
Query: 268 QTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGXVRYFTEPS 447
+ L LYR+P F++ +F ++A G+ KKGG+ D EAA+RI+L+DWN G + YFT P
Sbjct: 363 EKLLSLYRVPTFTSVDDFLQKVATLRGKLKKGGIVDVEAAARIVLHDWNEGKIPYFTVPP 422
Query: 448 ETXDAD 465
+ D
Sbjct: 423 KRDAVD 428
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/90 (37%), Positives = 52/90 (57%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVA 190
PNVGKSS+IN+L C V PG TK Q + L +I ++D PG+V+Q+ +S++ +
Sbjct: 325 PNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNN-DSETDIV 383
Query: 191 LKNAIRVGSLKDPVTPATAILRGLTSKPYK 280
LK +RV +L D +LR + + K
Sbjct: 384 LKGVVRVTNLADASEHIGEVLRRVKKEHLK 413
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +1
Query: 256 RANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGXVRYF 435
R K+ L+ Y+I D+ +F QL++ G+ +GG PD ++++L+DW G + +F
Sbjct: 406 RVKKEHLKRAYKIEDWVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFF 465
Query: 436 TEPSE 450
P +
Sbjct: 466 VPPPQ 470
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/65 (46%), Positives = 43/65 (66%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVA 190
PNVGKSS+IN L + + C PGVT++++ V+ S +++LDSPGI+ SD T A
Sbjct: 409 PNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLELLDSPGILPMR--ISDQTAA 466
Query: 191 LKNAI 205
+K AI
Sbjct: 467 IKLAI 471
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQS 163
PNVGKSS IN+L K V STPG TK QT+ + ++ + D PG+VF S
Sbjct: 339 PNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLVISEELILCDCPGLVFPS 389
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQS 163
PNVGKSS IN+L K V TPG TK QT+ + ++ + D PG+VF S
Sbjct: 322 PNVGKSSTINALVGEKKTGVTHTPGKTKHFQTLIISEELTLCDCPGLVFPS 372
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 48.4 bits (110), Expect = 4e-06
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Frame = +2
Query: 11 PNVGKSSIINSLNR-----------SKACNVGSTPGVTKQMQTVQLDSK--IKILDSPGI 151
PNVGKS++INS++R +K VG PGVT+ + ++ S+ I +LD+PG+
Sbjct: 145 PNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISSQPSIYVLDTPGV 204
Query: 152 VFQSGPESDSTVALKNAIRVGSLKDPVTPATAILRGLTS 268
+ S P D LK A+ G++KD V I + L S
Sbjct: 205 LVPSIP--DMETGLKLAL-TGAVKDSVVGEERIAKYLLS 240
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQM----QTVQLDSKIKILDSPGI----VFQSG 166
PNVGKSSI+N+L V G T+ T + K K++D+ GI S
Sbjct: 382 PNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRRAAVASA 441
Query: 167 PESDSTVALKNAIRVGSLKDPVTPATAILRGLTSKPYKI 283
+ T+++K A R D V + +T + YKI
Sbjct: 442 GSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKI 480
Score = 31.5 bits (68), Expect = 0.52
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQM---QTVQLDSKIKILDSPGIVFQSGPESDS 181
PNVGKS++ N L V PGVT+ ++ D + ++D+ G++ S ++
Sbjct: 169 PNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDREFMVIDTGGVITLSKSQAGV 228
Query: 182 TVALKNAIRVGSLKDPVTPATAILRGLTS 268
L VG P+ A + + S
Sbjct: 229 MEELAITTTVGMDGIPLASREAAIARMPS 257
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 14 NVGKSSIINSLNRS-KACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVF 157
NVGKSS++N+L R PG+T+ + +L SK+ ++D PG F
Sbjct: 404 NVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFRLASKLCLVDLPGYGF 452
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 35.1 bits (77), Expect = 0.042
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Frame = +2
Query: 11 PNVGKSSIINSLNR-----------SKACNVGSTPGVTKQMQTVQLDS--KIKILDSPGI 151
PNVGKS+I+N+++R K V S PG TK + ++ S I +LD+PG+
Sbjct: 144 PNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPNIYVLDTPGV 203
Query: 152 VFQ--SGPESDSTVALKNAIRVGSLKD 226
+ ES +AL AI+ +++
Sbjct: 204 LSPVFFNDESGPLLALTGAIKDSMMQE 230
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 34.7 bits (76), Expect = 0.055
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTK-QMQT-VQLDSK-IKILDSPGIVFQSGPE 172
PNVGKS+++N+L + + VG G+T+ ++T Q D++ + ++D+ G + +SG E
Sbjct: 320 PNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRTVYLVDTAGWMERSGKE 376
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 8 SPNVGKSSIINSLNRSKACNVGSTPGVTKQM---QTVQLDSKIKILDSPGIVFQSGPESD 178
SPNVGKSS++ L+ K V S P T+ + V + ++ D+PG++ + E +
Sbjct: 252 SPNVGKSSLVRILSSGKP-EVCSYPFTTRGILMGHIVSNHERFQVTDTPGLLTRDDDERN 310
Query: 179 STVALKNAI 205
+ L A+
Sbjct: 311 NIEKLTLAV 319
>03_02_0267 +
6990674-6990890,6991692-6991761,6991824-6991913,
6992635-6992797,6992910-6993137
Length = 255
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 14 NVGKSSIINSL-NRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPG 148
NVGKSS+IN+L R +A PG T+ + ++ ++D PG
Sbjct: 49 NVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPG 94
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLD---SKIKILDSPGI 151
PNVGKSS++N+ ++S+ V G T+ + + I +LD+ GI
Sbjct: 314 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGI 363
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 17 VGKSSIINSLNRSKACNVGSTPGVTKQMQTVQ--LDS-KIKILDSPGI 151
VGKS++INS+ + + + G T ++ V +D K+ I+D+PG+
Sbjct: 4924 VGKSTVINSIMGEEKNKINAFDGATTNVRLVSSVVDGIKVNIIDTPGL 4971
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 30.7 bits (66), Expect = 0.90
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQM---QTVQLDSKIKILDSPGIVFQSGPESDS 181
PNVGKS++IN + K V P T+ + + +I + D+PG++ + + D
Sbjct: 134 PNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTPGVIKKEMHKLD- 192
Query: 182 TVALKN 199
T+ +KN
Sbjct: 193 TMMMKN 198
>07_01_0075 - 558829-560859
Length = 676
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSK---IKILDSPGIV 154
PNVGKSS +N + R+ +V TK + D K +++D+PGI+
Sbjct: 177 PNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
>06_01_0668 - 4882174-4884204
Length = 676
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSK---IKILDSPGIV 154
PNVGKSS +N + R+ +V TK + D K +++D+PGI+
Sbjct: 177 PNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 17 VGKSSIINSLNRSKACNVGSTPGVTKQMQTV--QLDS-KIKILDSPGIVFQSGPESDSTV 187
VGKS+ INS+ + T+++Q V ++ K+K++D+PG+ S + +
Sbjct: 394 VGKSATINSIFDDVRLETNAFDTSTRKVQEVVGAVEGIKVKVIDTPGLSCSSSDQHHNQK 453
Query: 188 ALKNAIRVGSLKDP 229
L + R+ S P
Sbjct: 454 ILNSVKRLISRNPP 467
>11_01_0467 +
3621266-3621401,3621531-3622699,3622815-3623128,
3623276-3623937,3624040-3624401
Length = 880
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 328 QLAQRMGRFKKGGVPDQEAASRILLNDWNIGXVRYFTEPSE 450
QLAQ +G ++ + D+E+ +R LL+ NIG P+E
Sbjct: 820 QLAQELGLCEEAPMADEESGARCLLSVLNIGLCCTRLAPNE 860
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 476 PRXISASXVSEGSVK*RTXPMFQSLSNILEAASWSGTPPFLNLPIR--CASCAKNS*GVL 303
PR + + ++ T + L N + A GTPPF NLP+R +C N V
Sbjct: 260 PREVVMERMFTPRIQMFTKDIVDQLVNEDQNAGGDGTPPFGNLPLRPISTTCYANKQNVK 319
Query: 302 KSG 294
G
Sbjct: 320 GKG 322
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +2
Query: 8 SPNVGKSSIINSLNRSKACNVG-STPGVTKQMQTVQLD--SKIKILDSPGIVF--QSGPE 172
+PN GKSS+ N++ +K V T T ++ V ++I D+PG++ P
Sbjct: 156 APNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFDTPGLMLGHHGLPH 215
Query: 173 SDSTVALKNA 202
D TV +++A
Sbjct: 216 RDVTVRVESA 225
>06_01_0930 -
7181514-7181756,7181847-7181903,7182656-7182859,
7182937-7183266
Length = 277
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 191 LKNAIRVGSLK-DPVTPATAILRGLTSKPYKICIEY 295
L++AIR G L A+LRG+ + KIC+EY
Sbjct: 120 LEDAIRCGGLAATKAARIRAMLRGVRERRGKICLEY 155
>08_02_1489 +
27490143-27490365,27490731-27490732,27491606-27491651,
27491892-27492091,27492505-27492645,27492730-27492810,
27493353-27493477,27493552-27493600
Length = 288
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 147 PGLSRILIFESSWTVCICLVTPGVLPTLQALDRFKLL 37
P S +I SW C+ L VLP L+ + K++
Sbjct: 170 PSTSHNIINRISWAFCVYLEAVSVLPQLRLMQNTKIV 206
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 11 PNVGKSSIINSLN--RSKACNVGSTPGVTKQMQTVQL-DSKIKILDSPGIV 154
P+VGKS+++ L S+A + T +T +Q D+KI++LD PGI+
Sbjct: 71 PSVGKSTLLTMLTGTHSEAASYEFTT-LTCIPGIIQYNDTKIQLLDLPGII 120
>03_03_0070 - 14256143-14257492
Length = 449
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 114 SWTVCICLVTPGVLPTLQALDRFKLL 37
SW +CLV GV+ L +DR+ L+
Sbjct: 126 SWDGVVCLVPAGVVRPLSRIDRYVLV 151
>02_05_1162 - 34593101-34594624
Length = 507
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 119 SKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDPVTPA--TAILRGLTSKPYKICIE 292
+K++++ S G Q P + ++ SL+ P+ A A L GL P C++
Sbjct: 39 AKVRLMVSYGGRIQPRPHDHQLSYVNGETKILSLERPLRFADFAARLAGLAGSPGDFCVK 98
Query: 293 YQ 298
YQ
Sbjct: 99 YQ 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,093
Number of Sequences: 37544
Number of extensions: 282564
Number of successful extensions: 716
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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