Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0541
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 8e-22
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 41 9e-04
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 31 0.53
SB_11524| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 31 0.92
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 29 3.7
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 27 8.6
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 100 bits (240), Expect = 8e-22
Identities = 45/73 (61%), Positives = 59/73 (80%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVA 190
PNVGKSSIINSL RS+ C VG+TPGVTK MQ VQLD IK+LDSPGIV +G +SD+ +
Sbjct: 464 PNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLDKHIKLLDSPGIVMDTG-DSDAAII 522
Query: 191 LKNAIRVGSLKDP 229
L+N +++ +++DP
Sbjct: 523 LRNCVKIENIEDP 535
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVA 190
PNVGKSSIIN+L K C V G TK Q + L +I ++D PG+V+ +G ++++ +
Sbjct: 176 PNVGKSSIINTLKAKKVCKVAPIAGETKVWQYITLMRRIYLVDCPGVVYPTG-DTETEII 234
Query: 191 LKNAIRVGSLKDPVTPATAIL----RGLTSKPYKI 283
LK +RV ++K+ +L R +K Y++
Sbjct: 235 LKGVVRVENVKEAAEHIPTVLERVKREYLAKTYRV 269
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +1
Query: 256 RANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGXVRYF 435
R ++ L YR+ + +F Q+++R G+ KGG PD ++++LND+ G + YF
Sbjct: 257 RVKREYLAKTYRVQAWDDCTDFLEQVSRRSGKLLKGGEPDINTVAKMILNDFQRGKLPYF 316
Query: 436 TEP 444
P
Sbjct: 317 VAP 319
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTV 109
PNVGKSS IN++ +SK V STPG TK Q V
Sbjct: 169 PNVGKSSTINTILQSKKVAVSSTPGRTKHFQYV 201
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDS---KIKILDSPGIVFQS 163
PN GKS++IN L K V P T+Q+ S +I +LD+PG+V QS
Sbjct: 48 PNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVTQS 101
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKI---KILDSPGIVFQSGPESDS 181
PNVGKSS +N + R+ +V TK + +D K +++D+PG V E +
Sbjct: 92 PNVGKSSFMNKVTRADV-DVQPYAFTTKSLFVGHMDYKYLRWQVVDTPG-VLDHPLEERN 149
Query: 182 TVALKNAIRVGSLKDPVTPATAI 250
T+ ++ + L+ V T I
Sbjct: 150 TIEMQAITALAHLRSAVLYVTDI 172
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 11 PNVGKSSIINSLNRSKACNVGSTPGVTK 94
PNVGKS+++N + +A V PGVT+
Sbjct: 30 PNVGKSTLVNRILGRRAAVVQDVPGVTR 57
>SB_11524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 151 SIPIRPGE*FNGSTQEC---YPRWQPKRPSHTGYSYPTRANKQTLQ 279
S+P + GE ST C YPRW+P S + R N Q+LQ
Sbjct: 82 SLP-KEGEKMRSSTSPCGAHYPRWRPGYASSVFSGFSCRKNYQSLQ 126
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 235 TGYSYPTRANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKG 363
TG+S T + +TLQD R F T +E + +R R ++G
Sbjct: 3 TGHSNSTLRSGETLQDTNRYDVFKTYEELYLSKVEREDRLEQG 45
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = +1
Query: 190 TQECYPRWQPKRPSHTGYSYPTRANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGV 369
+Q+ P QP +P H Y R Q Y P STPQ+ F Q + GG
Sbjct: 458 SQQAPPTKQPMQPQH---QYQARPGGPPQQRQY--PPSSTPQQGFPQRPGSPPTSQPGGF 512
Query: 370 PDQE 381
P Q+
Sbjct: 513 PGQQ 516
>SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 597
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = -3
Query: 524 EVDVKILRDESHXLGVPRXISASXVSEGSVK*RTXPMFQSLSNILEAASWSGTPPFLNLP 345
E+D++ ++ +H +GV A +++ + Q++++I+ SG LP
Sbjct: 521 ELDIEYAQELAHEVGVENIRRAESLNDNPI------FIQAMADIVHKHLQSGETCSRQLP 574
Query: 344 IRCASCAKNS*GVLK 300
+RC C + G K
Sbjct: 575 LRCPMCVNATCGPAK 589
>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 1788
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 292 IPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWN----IGXVRYFTE 441
IP+F P +A + RFK+ + AS+ +L+D+N ++YFT+
Sbjct: 1222 IPEFDMPGHGYAAIKSMEARFKRLKDSNPSEASKYILSDFNDTSKYLSIQYFTD 1275
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 392 LEAASWSGTPPFLNLPIRCASCAKNS 315
++ +SW G+PPFL LP R S +S
Sbjct: 1083 VDKSSWLGSPPFL-LPARAVSSQSHS 1107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,583
Number of Sequences: 59808
Number of extensions: 331864
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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