Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0537
         (519 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.5  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   6.5  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   6.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 389 INSSTLCATRTETGLLXSSRK 451
           INS T+C T +  G+    +K
Sbjct: 149 INSDTMCVTFSNLGIQCVKKK 169


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 86  FSQITAVVTSQCTKNNAEDKVPEV 157
           F +I   + S  + N  +DK+P++
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQI 226


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 86  FSQITAVVTSQCTKNNAEDKVPEV 157
           F +I   + S  + N  +DK+P++
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQI 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,517
Number of Sequences: 336
Number of extensions: 1780
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)