Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0537
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    28   0.96 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   9.0  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   9.0  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 98  TAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGAPTRFSRST 277
           T+V  +   +NN E+   + +       N  +G+V LN   T++ EA  N   TR     
Sbjct: 447 TSVSHNTYRQNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEE 506

Query: 278 VTRVL 292
            T +L
Sbjct: 507 ATEIL 511



 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 383 LXWASXMWFAYSLPTQGRTPCSTELIQP 300
           L WAS   FAY LP     P +T    P
Sbjct: 128 LQWASVPLFAYDLPPDPSNPNATSSSPP 155


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 122 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 229
           T+N+   K+  ++ ++++F  CL    +LN LK+ +
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRV 72


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
          reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 84 SSANTPAAKIVIKTVFH 34
          SS +TPA K+  KT+FH
Sbjct: 2  SSIDTPANKLQAKTLFH 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,248
Number of Sequences: 5004
Number of extensions: 31554
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)