Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0537
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457...    29   3.0  
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739     28   5.2  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    28   5.2  
06_03_0592 + 22585546-22588573,22588680-22589032                       27   6.8  

>07_01_0618 +
           4577417-4577430,4577838-4577874,4578070-4578173,
           4578512-4578707,4579559-4579628,4579849-4579952,
           4580296-4580335,4581016-4581070,4581418-4581426,
           4582026-4582157,4582544-4582613,4583029-4583086,
           4583173-4583228,4583315-4583470,4583589-4583700,
           4583782-4583923,4584141-4584216,4584306-4584401,
           4584509-4584637
          Length = 551

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 217 ENRN*RSQAKRCTDEVFKKYCDKSAQLKGCISSVLQG 327
           E R+   Q KRC  E+    C   AQL+G  +++LQG
Sbjct: 263 ELRDLSLQVKRCLSEIITSLCADLAQLEG--ANILQG 297


>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
          Length = 135

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 301 GCISSVLQGVRPXVGNEYANHXNDAXN 381
           GC SSV   +    GNE  NH  D  N
Sbjct: 91  GCTSSVCSNMNTFAGNEEGNHAVDRCN 117


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 74   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 205
            +AD   QI+A V  + T   A +    V+ A  ++G+C+  L +
Sbjct: 1320 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAE 1363


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 23  VTMMWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLV 202
           VT+ +  +    F  G+    F ++ ++     ++NN   K+P+       F N L  L 
Sbjct: 656 VTLEYLEIQSNFFVGGI-PQSFMKLVSIKEMDISRNNLSGKIPQ-------FLNLLSSLH 707

Query: 203 DLNVLKTEIEEAKPNG 250
           DLN+     +   P G
Sbjct: 708 DLNLSFNNFDGVIPTG 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,145,750
Number of Sequences: 37544
Number of extensions: 213565
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)