Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0537
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    29   3.0  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      29   3.0  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_48548| Best HMM Match : HPPK (HMM E-Value=3.9e-09)                  27   9.3  
SB_44460| Best HMM Match : ELK (HMM E-Value=5.3)                       27   9.3  

>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 17  FLVTMMWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKG 196
           FL  +     ++++   GV  D +S I  +V      N A D + EVE A R        
Sbjct: 284 FLKVLKGAGAVLSVIGIGV--DLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETE 341

Query: 197 LVDLNV-LKTEIEE 235
           L D N  LKT + E
Sbjct: 342 LRDFNTELKTFMRE 355


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -1

Query: 306 TAFQLSTLVTVLLENLVGAPFGLASSISVFRTFKSTSPLRQFP 178
           T+ ++  +   LLE+L   PFG+ S+ S+ + F S + L++FP
Sbjct: 444 TSLKVLKVTHNLLESL---PFGIQSASSLVKLFLSNNKLKEFP 483


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 179 GNCLKGLVDLNVLKTEIEE 235
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


>SB_48548| Best HMM Match : HPPK (HMM E-Value=3.9e-09)
          Length = 170

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 114 RNAPRTM---LKTKSLKLKQHCVPLETASRDWSI 206
           +NAPRT+   +     K  Q+C+P+ ++S  WS+
Sbjct: 59  KNAPRTIDLDISFNGSKEIQYCLPIGSSSTTWSL 92


>SB_44460| Best HMM Match : ELK (HMM E-Value=5.3)
          Length = 91

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +1

Query: 244 KRCTD---EVFKKYCDKSAQLKGCISSVLQGVR 333
           KRC D   E+ + Y  + + +KGCI  V   +R
Sbjct: 34  KRCRDLYGELLQGYSSRESAIKGCIHEVSNNIR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,370,243
Number of Sequences: 59808
Number of extensions: 255689
Number of successful extensions: 535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)