Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   5.5  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   7.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   9.5  

>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 336 RISVMPMRSI*QVSDPVTRI 277
           R+SV+P+  + Q+S+ V  I
Sbjct: 248 RLSVLPVDKLLQISEEVANI 267


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 361 VHHITMSDKNFCDANAINLTSLGSCDSNPVKFK 263
           + H T S KN+  A   N  S  S D+     +
Sbjct: 331 LRHYTASSKNYRSATGGNSASNSSGDAQSTSLR 363


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 307 LTSLGSCDSNPVK 269
           + ++  CDSNP K
Sbjct: 414 IDTINECDSNPCK 426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,929
Number of Sequences: 336
Number of extensions: 1713
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)