Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    44   1e-05
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    25   7.3  

>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 17/30 (56%), Positives = 25/30 (83%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           YYL+L+GF+  DPRL +L+ L +QKF+SD+
Sbjct: 114 YYLSLSGFKCVDPRLKKLLGLTAQKFISDV 143



 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPD 246
           L +FL Q+++Y+P IPD
Sbjct: 93  LENFLAQMDDYSPLIPD 109


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 376 SCSAXVHHITMSDKNFC 326
           SCS  ++ ++ SDK FC
Sbjct: 250 SCSYVINEVSTSDKQFC 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,722
Number of Sequences: 5004
Number of extensions: 27757
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)