Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0216 - 15727044-15727124,15728557-15728607,15728695-157287...    39   0.002
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969...    27   7.2  
04_04_0360 - 24684159-24684565,24684654-24685089                       27   9.5  

>09_04_0216 -
           15727044-15727124,15728557-15728607,15728695-15728752,
           15729336-15729398,15729740-15729804,15729901-15730038
          Length = 151

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           +YL  +GF   D RL RL+A+A+QKF+SDI
Sbjct: 54  HYLGRSGFYCPDLRLTRLVAVATQKFISDI 83


>01_06_1678 -
           39095986-39096205,39096400-39096477,39096578-39096949,
           39097374-39097671,39097867-39098077,39098331-39099023
          Length = 623

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 274 PDSSHRIRDLSD*SHWH 324
           PD  H+++D +D  HWH
Sbjct: 577 PDVVHKVKDAADRLHWH 593


>04_04_0360 - 24684159-24684565,24684654-24685089
          Length = 280

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 391 DSTYASCSAXVHHITMSDKNFCDANAINLTSLGSCDSN 278
           D +    +A   H+T    + C  N IN  S+  CD N
Sbjct: 127 DDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKN 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,880,447
Number of Sequences: 37544
Number of extensions: 166137
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)