Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)                 27   7.4  
SB_36541| Best HMM Match : WD40 (HMM E-Value=0)                        27   9.7  
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               27   9.7  
SB_12128| Best HMM Match : TPR_1 (HMM E-Value=4.7e-21)                 27   9.7  

>SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 273 TGFESQDPRLVRLIALASQKFLSDI 347
           T +   D   VRL++LA+QKF+SD+
Sbjct: 67  TTYVFDDYPSVRLVSLAAQKFISDV 91


>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
          Length = 1080

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 300 VSDPVTRIRLNSNNMHHGIGYGWIIILK 217
           +S  + RI LN  + +HG+  G I ILK
Sbjct: 41  ISSTLARISLNQASYYHGMNTGRIAILK 68


>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1070

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 227 IIHPYPIPWCILFEFNRIRVTGSETCQIDRIGITEILI*HCNMMHXSTAXCVRRI 391
           I+H    P C++ +F R  V+G+     D + I ++    C +   ++  CV R+
Sbjct: 549 IMHHLDQPRCVMVDFGRKGVSGANE---DNLKIWDMRTQECIITKPASVSCVTRV 600


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 130 MQMSRIGSPSVGMDDDGCAGHALGDFLLQLENYNPSIPDSVVHII*I*PDSSHR 291
           M MS +   +  MD D      +GD    ++   PS+P  VVH+    PDS  R
Sbjct: 311 MGMSSVSDDTEMMDTDS----EIGDTTSHVQTRRPSVPVPVVHVT---PDSPTR 357


>SB_12128| Best HMM Match : TPR_1 (HMM E-Value=4.7e-21)
          Length = 230

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 GCAGHALGDFLLQLENYNPSI 240
           GC   A+GDF L  EN+  +I
Sbjct: 93  GCVNKAMGDFTLAKENFEKAI 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,782,414
Number of Sequences: 59808
Number of extensions: 201476
Number of successful extensions: 409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)