Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25816-1|AAB61242.1|  218|Homo sapiens TATA-binding protein asso...    52   1e-06
U13991-1|AAA62230.1|  218|Homo sapiens TATA-binding protein asso...    52   1e-06
CR541943-1|CAG46741.1|  218|Homo sapiens TAF10 protein.                52   1e-06
BC012088-1|AAH12088.1|  218|Homo sapiens TAF10 RNA polymerase II...    52   1e-06
AF498312-1|AAM14627.1|  218|Homo sapiens TAF10 RNA polymerase II...    52   1e-06

>U25816-1|AAB61242.1|  218|Homo sapiens TATA-binding protein
           associated factor 30 kDa subunit protein.
          Length = 218

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 21/30 (70%), Positives = 27/30 (90%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           YYLN  GFE+ DPR++RLI+LA+QKF+SDI
Sbjct: 137 YYLNRAGFEASDPRIIRLISLAAQKFISDI 166



 Score = 32.7 bits (71), Expect = 0.61
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DFL+QLE+Y P+IPD+V
Sbjct: 116 LVDFLMQLEDYTPTIPDAV 134


>U13991-1|AAA62230.1|  218|Homo sapiens TATA-binding protein
           associated factor 30 kDa subunit protein.
          Length = 218

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 21/30 (70%), Positives = 27/30 (90%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           YYLN  GFE+ DPR++RLI+LA+QKF+SDI
Sbjct: 137 YYLNRAGFEASDPRIIRLISLAAQKFISDI 166



 Score = 32.7 bits (71), Expect = 0.61
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DFL+QLE+Y P+IPD+V
Sbjct: 116 LVDFLMQLEDYTPTIPDAV 134


>CR541943-1|CAG46741.1|  218|Homo sapiens TAF10 protein.
          Length = 218

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 21/30 (70%), Positives = 27/30 (90%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           YYLN  GFE+ DPR++RLI+LA+QKF+SDI
Sbjct: 137 YYLNRAGFEASDPRIIRLISLAAQKFISDI 166



 Score = 32.7 bits (71), Expect = 0.61
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DFL+QLE+Y P+IPD+V
Sbjct: 116 LVDFLMQLEDYTPTIPDAV 134


>BC012088-1|AAH12088.1|  218|Homo sapiens TAF10 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 30kD
           protein.
          Length = 218

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 21/30 (70%), Positives = 27/30 (90%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           YYLN  GFE+ DPR++RLI+LA+QKF+SDI
Sbjct: 137 YYLNRAGFEASDPRIIRLISLAAQKFISDI 166



 Score = 32.7 bits (71), Expect = 0.61
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DFL+QLE+Y P+IPD+V
Sbjct: 116 LVDFLMQLEDYTPTIPDAV 134


>AF498312-1|AAM14627.1|  218|Homo sapiens TAF10 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 30 k
           protein.
          Length = 218

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 21/30 (70%), Positives = 27/30 (90%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           YYLN  GFE+ DPR++RLI+LA+QKF+SDI
Sbjct: 137 YYLNRAGFEASDPRIIRLISLAAQKFISDI 166



 Score = 32.7 bits (71), Expect = 0.61
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DFL+QLE+Y P+IPD+V
Sbjct: 116 LVDFLMQLEDYTPTIPDAV 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,537,529
Number of Sequences: 237096
Number of extensions: 938604
Number of successful extensions: 1611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)