Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071220-1|AAL48842.1|  146|Drosophila melanogaster RE26329p pro...    48   6e-06
AJ243837-1|CAB55761.1|  146|Drosophila melanogaster TATA binding...    48   6e-06
AJ237968-1|CAB40838.1|  146|Drosophila melanogaster TATA-binding...    48   6e-06
AE014134-465|AAF51211.1|  146|Drosophila melanogaster CG3069-PA ...    48   6e-06
AY118419-1|AAM48448.1|  167|Drosophila melanogaster RE73934p pro...    36   0.020
AJ276419-1|CAC08819.1|  167|Drosophila melanogaster TBP associat...    36   0.020
AJ243836-1|CAB55760.2|  167|Drosophila melanogaster TATA binding...    36   0.020
AE014134-466|AAF51210.1|  167|Drosophila melanogaster CG2859-PA ...    36   0.020

>AY071220-1|AAL48842.1|  146|Drosophila melanogaster RE26329p
           protein.
          Length = 146

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 19/32 (59%), Positives = 29/32 (90%)
 Frame = +3

Query: 255 AYYLNLTGFESQDPRLVRLIALASQKFLSDIV 350
           ++YLN+ GF+S D R+VRLI+LA+QK++SDI+
Sbjct: 61  SHYLNMGGFQSDDKRIVRLISLAAQKYMSDII 92



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DF+ QLE+Y P IPD+V
Sbjct: 41  LSDFMSQLEDYTPLIPDAV 59


>AJ243837-1|CAB55761.1|  146|Drosophila melanogaster TATA binding
           protein asssociatedfactor 16kDa subunit, (dTAFII16
           protein) protein.
          Length = 146

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 19/32 (59%), Positives = 29/32 (90%)
 Frame = +3

Query: 255 AYYLNLTGFESQDPRLVRLIALASQKFLSDIV 350
           ++YLN+ GF+S D R+VRLI+LA+QK++SDI+
Sbjct: 61  SHYLNMGGFQSDDKRIVRLISLAAQKYMSDII 92



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DF+ QLE+Y P IPD+V
Sbjct: 41  LSDFMSQLEDYTPLIPDAV 59


>AJ237968-1|CAB40838.1|  146|Drosophila melanogaster TATA-binding
           protein associatedfactor TAFII16 protein.
          Length = 146

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 19/32 (59%), Positives = 29/32 (90%)
 Frame = +3

Query: 255 AYYLNLTGFESQDPRLVRLIALASQKFLSDIV 350
           ++YLN+ GF+S D R+VRLI+LA+QK++SDI+
Sbjct: 61  SHYLNMGGFQSDDKRIVRLISLAAQKYMSDII 92



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DF+ QLE+Y P IPD+V
Sbjct: 41  LSDFMSQLEDYTPLIPDAV 59


>AE014134-465|AAF51211.1|  146|Drosophila melanogaster CG3069-PA
           protein.
          Length = 146

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 19/32 (59%), Positives = 29/32 (90%)
 Frame = +3

Query: 255 AYYLNLTGFESQDPRLVRLIALASQKFLSDIV 350
           ++YLN+ GF+S D R+VRLI+LA+QK++SDI+
Sbjct: 61  SHYLNMGGFQSDDKRIVRLISLAAQKYMSDII 92



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 196 LGDFLLQLENYNPSIPDSV 252
           L DF+ QLE+Y P IPD+V
Sbjct: 41  LSDFMSQLEDYTPLIPDAV 59


>AY118419-1|AAM48448.1|  167|Drosophila melanogaster RE73934p
           protein.
          Length = 167

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 14/30 (46%), Positives = 24/30 (80%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           + L   GF + DP++VRL+++++QKF+SDI
Sbjct: 78  HILKTAGFCTVDPKIVRLVSVSAQKFISDI 107


>AJ276419-1|CAC08819.1|  167|Drosophila melanogaster TBP associated
           factor TAFII24 protein.
          Length = 167

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 14/30 (46%), Positives = 24/30 (80%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           + L   GF + DP++VRL+++++QKF+SDI
Sbjct: 78  HILKTAGFCTVDPKIVRLVSVSAQKFISDI 107


>AJ243836-1|CAB55760.2|  167|Drosophila melanogaster TATA binding
           protein asssociatedfactor 24kDa subunit, (dTAFII24
           protein) protein.
          Length = 167

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 14/30 (46%), Positives = 24/30 (80%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           + L   GF + DP++VRL+++++QKF+SDI
Sbjct: 78  HILKTAGFCTVDPKIVRLVSVSAQKFISDI 107


>AE014134-466|AAF51210.1|  167|Drosophila melanogaster CG2859-PA
           protein.
          Length = 167

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 14/30 (46%), Positives = 24/30 (80%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           + L   GF + DP++VRL+++++QKF+SDI
Sbjct: 78  HILKTAGFCTVDPKIVRLVSVSAQKFISDI 107


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,103
Number of Sequences: 53049
Number of extensions: 297607
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1497419784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)