Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55370-5|AAA97996.1|  176|Caenorhabditis elegans Taf (tbp-associ...    38   0.005
U55370-4|AAK82906.1|  179|Caenorhabditis elegans Taf (tbp-associ...    38   0.005
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U50735-1|AAA99780.1|   66|Caenorhabditis elegans unc-13 protein.       29   1.6  
M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein.       29   1.6  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U55370-5|AAA97996.1|  176|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 10,
           isoform a protein.
          Length = 176

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDIVI 353
           ++L   G +  DPR+ R+I+LA+QK +SDI++
Sbjct: 97  HFLKSAGVDGSDPRVTRMISLAAQKHVSDIIL 128


>U55370-4|AAK82906.1|  179|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 10,
           isoform b protein.
          Length = 179

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDIVI 353
           ++L   G +  DPR+ R+I+LA+QK +SDI++
Sbjct: 100 HFLKSAGVDGSDPRVTRMISLAAQKHVSDIIL 131


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -1

Query: 412 FXALXXFDSTYASCSAXVHHITMSDKNFCDANAINLTSLGSCDSNPVKFK*YAPRNRV 239
           F A     S Y  C+     +    + +C    I + S+G C+      K Y P NRV
Sbjct: 703 FCAHPRSPSMYLQCAPLYGRLGRWTERYCPDTLIFIVSIGRCEKGEETRKPYDPDNRV 760


>Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical
           protein ZK524.2e protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical
           protein ZK524.2d protein.
          Length = 2155

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical
           protein ZK524.2a protein.
          Length = 1813

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical
           protein ZK524.2e protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
           protein ZK524.2d protein.
          Length = 2155

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical
           protein ZK524.2a protein.
          Length = 1813

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical
           protein ZK524.2e protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical
           protein ZK524.2d protein.
          Length = 2155

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical
           protein ZK524.2a protein.
          Length = 1813

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>U50735-1|AAA99780.1|   66|Caenorhabditis elegans unc-13 protein.
          Length = 66

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein.
          Length = 1815

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 TDGEPIRLICIALVKISLINAFLTFNNYCNLK 66
           +DG  +RL+CI + K  L  A   FN+Y  +K
Sbjct: 13  SDGMSMRLLCITIKKARLQGAVDEFNSYVTVK 44


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 155 GEPIRLICIALVKISLINAFLTFNNYCNLKNHLL*YTQHFK 33
           G P++   I L+ +        FN YC    HLL   QHFK
Sbjct: 554 GTPLQNNLIELISLMYFVLSKVFNKYCEDITHLL---QHFK 591


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 155 GEPIRLICIALVKISLINAFLTFNNYCNLKNHLL*YTQHFK 33
           G P++   I L+ +        FN YC    HLL   QHFK
Sbjct: 554 GTPLQNNLIELISLMYFVLSKVFNKYCEDITHLL---QHFK 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,898,749
Number of Sequences: 27780
Number of extensions: 156636
Number of successful extensions: 322
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)