Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0535
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31720.2 68417.m04503 transcription initiation factor IID (TF...    39   0.001
At4g31720.1 68417.m04502 transcription initiation factor IID (TF...    39   0.001
At5g13740.1 68418.m01599 sugar transporter family protein contai...    27   6.0  
At2g10110.1 68415.m01050 hypothetical protein                          27   6.0  
At5g47490.1 68418.m05864 expressed protein                             27   7.9  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    27   7.9  
At2g38060.1 68415.m04672 transporter-related low similarity to v...    27   7.9  

>At4g31720.2 68417.m04503 transcription initiation factor IID
           (TFIID) 23-30kDa subunit (TAF2H) family protein contains
           Pfam profile: PF03540 transcription initiation factor
           TFIID 23-30kDa
          Length = 134

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/30 (50%), Positives = 25/30 (83%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           +YL  +GF+  D RL+RL+A+A+QKF++D+
Sbjct: 39  HYLAKSGFQCPDVRLIRLVAVATQKFVADV 68



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 193 ALGDFLLQLENYNPSIPDSVV 255
           AL +FL  L +Y P+IPD +V
Sbjct: 17  ALTEFLASLMDYTPTIPDDLV 37


>At4g31720.1 68417.m04502 transcription initiation factor IID
           (TFIID) 23-30kDa subunit (TAF2H) family protein contains
           Pfam profile: PF03540 transcription initiation factor
           TFIID 23-30kDa
          Length = 134

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/30 (50%), Positives = 25/30 (83%)
 Frame = +3

Query: 258 YYLNLTGFESQDPRLVRLIALASQKFLSDI 347
           +YL  +GF+  D RL+RL+A+A+QKF++D+
Sbjct: 39  HYLAKSGFQCPDVRLIRLVAVATQKFVADV 68



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 193 ALGDFLLQLENYNPSIPDSVV 255
           AL +FL  L +Y P+IPD +V
Sbjct: 17  ALTEFLASLMDYTPTIPDDLV 37


>At5g13740.1 68418.m01599 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 486

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 82  LLNVRKALINEIFTKAMQMSRIGSPSVGMDDDGCAGHALGDFLLQLENYNPSI 240
           LL   KA  +EIF    Q + + + S         G ALG FL Q  +  P++
Sbjct: 147 LLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLIIGPALGGFLAQPADKYPNV 199


>At2g10110.1 68415.m01050 hypothetical protein
          Length = 169

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 146 SVHHRSVW--TTTVAQDTL*ATSFFSLRIIIH 235
           S+HH + W  TT +   T  +T+  S+ IIIH
Sbjct: 21  SIHHSTTWSSTTIIIHSTNHSTNRSSITIIIH 52


>At5g47490.1 68418.m05864 expressed protein
          Length = 1361

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 124 KAMQMSRIGSPSVGMDDDGCAGHALGDF 207
           ++ Q S++ SPS G   DG   HAL +F
Sbjct: 492 QSFQSSQLFSPSAGRSSDGRPPHALVNF 519


>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
            (PPR) repeat-containing protein contains Pfam profiles:
            PF03016 exostosin family, PF01535 PPR repeat
          Length = 1388

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 200  PKACPAQPSSSIPTDGEPIRLICIALVKISLINAFLTFNN 81
            P+  P+ P+SS+ T  E I+      +++++IN   T NN
Sbjct: 951  PEILPSLPASSLSTKVESIQGDYNRTIQLNMINVTATSNN 990


>At2g38060.1 68415.m04672 transporter-related low similarity to
           vesicular glutamate transporter 3 [Homo sapiens]
           GI:21213895, brain specific Na+-dependent inorganic
           phosphate cotransporter [Rattus norvegicus] GI:507415;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 512

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 188 PAQPSSSIPTDGEPIRLICIALVKISLINAFLTFN-NYCNLKNHLL*YTQHFKVFNLEFM 12
           P QPS+  P     +RL+   L   ++I A +T N  Y  L + +  Y Q     NL+  
Sbjct: 300 PVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQA 359

Query: 11  AWY 3
           AW+
Sbjct: 360 AWF 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,225,391
Number of Sequences: 28952
Number of extensions: 140177
Number of successful extensions: 299
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)