Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0534
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    29   0.028
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    29   0.028
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   3.2  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.2  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.4  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.8  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 0.028
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 523 PFEKSGKGSSTVRSITSGIIYKVRVYG 443
           P E+SGKG +T R ++S  IY   ++G
Sbjct: 67  PIERSGKGRTTFRWLSSTSIYAYFIFG 93


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 0.028
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 523 PFEKSGKGSSTVRSITSGIIYKVRVYG 443
           P E+SGKG +T R ++S  IY   ++G
Sbjct: 67  PIERSGKGRTTFRWLSSTSIYAYFIFG 93


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 381 DSWTLMVWIGIISVYSCIGSCSVSNTAFTRLIFLKNCEECPLTSSTSMNDAAST 220
           D  T+  ++ + ++ S      + N    R   L N + CP+TSS S + ++ +
Sbjct: 338 DQGTVESFVCVNTLVSEQEGLQLINEMKKRYSALINSQSCPITSSGSTDSSSQS 391


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 203 FVNVDGILENLELKSHNNILQMICSLH 123
           ++ ++G L  +E K+ +  L  IC+LH
Sbjct: 832 YIILNGRLIKMETKAQSVALGKICTLH 858



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 200 VNVDGILENLELKSHNNILQMICSLH 123
           V +  + +N   K+ + +L  IC+LH
Sbjct: 557 VQLTKLTKNCATKAQSVVLGRICTLH 582


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 6/16 (37%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -1

Query: 375 WTLMVWIGIIS-VYSC 331
           W  ++W+GI+S ++ C
Sbjct: 157 WLFILWVGILSTIFLC 172


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 315 VSNTAFTRLIFLKNC 271
           +SN +   LIFL NC
Sbjct: 237 ISNISLVSLIFLFNC 251


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 182 LENLELKSHNNILQMICSLH 123
           ++N   K+ + +L  IC+LH
Sbjct: 207 VKNFATKTQSAVLGKICTLH 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,027
Number of Sequences: 336
Number of extensions: 2809
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)