Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0534
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 1.9
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 27 2.6
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 26 4.5
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 4.5
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 25 5.9
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 5.9
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 25 7.8
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 7.8
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 7.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 7.8
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 7.8
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 25 7.8
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 242 DVDDVSGHSSQFLRNIKRVKAVFDTLQLPMQLYTDIMPIQTI 367
DV DV +SQ N+K V FD + +P + + P TI
Sbjct: 94 DVLDVKAAASQQEDNMKIVLPSFDAIDVPKAYHPSLRPYFTI 135
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 59 KKDESFTPHGK--MLHAFNVTPFDGESRSFEVYYCETSTQGF 178
K + SFTP G +NV F+G + +Y + S +GF
Sbjct: 161 KLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRGF 202
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 378 SWTLMVWIGIISVYSCIGSCSVSNTAFTRLIFLKNCEECPL 256
+WT+ W+G++ V+ GS TRL +CE+ PL
Sbjct: 276 NWTIFAWLGLVGVFQ--GS--------TRLTEKMSCEKYPL 306
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 107 NVTPFDGESRSFEVYYCETSTQGFLEYHQR 196
N F ES EVYYCE F + +QR
Sbjct: 81 NCVGFADESEVPEVYYCEICHPEFHKVYQR 110
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 354 LSKPSTSTNLTSSYITALQENSEF 425
+ K TST + +SY T L E ++F
Sbjct: 555 IEKSKTSTEVVASYDTTLDEETQF 578
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 5 KVIAPGYITNLDHFVSQLKK-DESFTPHGKMLHAFNVTP 118
K PG I +HF++ LK+ E K+LH TP
Sbjct: 315 KEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETP 353
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 354 GIISVYSCIGSCSVSN 307
GI+S+Y C SC ++N
Sbjct: 237 GILSIYVCSASCDLAN 252
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +2
Query: 152 YCETSTQGFLEYHQRLQTF----LLWYVDAASFIDVDDVSGHSSQFLRNIKRVKAVFDTL 319
Y T + L+ + L+ F W + S ++ DD S + F R K V+D
Sbjct: 12 YANTDREQKLQANNYLEEFQKSPAAWQI-CFSILNQDDSSIEAKLFAAQTLRQKIVYDFH 70
Query: 320 QLPMQLYTD 346
QLP + + +
Sbjct: 71 QLPKETHIE 79
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +2
Query: 230 ASFIDVDDVSGHSSQFLRNIKRVKAVFDTLQLPMQLYTDIMPI 358
+S+ ++DD ++++ R + F ++Q+P++ D P+
Sbjct: 301 SSYKNIDDYYDYTTRPRRTVLETLQEFKSVQIPIEYALDAFPV 343
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +3
Query: 321 SCLC--NCIQILCLSKPSTSTNLTS-SYITALQENS 419
+C C NC + CL+ P+ +T L + ++I+AL++ +
Sbjct: 327 ACQCGDNCECLGCLTHPNNATTLAALNHISALEKET 362
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 293 RVKAVFDTLQLPMQLYTDIM 352
+++A+F++L LP+ LY I+
Sbjct: 138 KIRAIFESLDLPIVLYAAIL 157
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 392 LHYRPSRKLGICAQMLQAVYSXFINN 469
LH+RPS G C Q+ AV+ NN
Sbjct: 219 LHFRPSSTYGFCTQI--AVFHQSKNN 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,677
Number of Sequences: 5004
Number of extensions: 44156
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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