Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0534
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0765 - 27910189-27912393,27912521-27912598                       28   6.0  
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    27   8.0  
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042...    27   8.0  

>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 303 QCSIRYSCLCNCIQILCLSKPSTS 374
           QC +RY  L +   ++CLS PS S
Sbjct: 58  QCLLRYRVLLHVRSVVCLSAPSAS 81


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 378 SWTLMVWIGIISVYS 334
           SW LMVWIG ++V S
Sbjct: 297 SWALMVWIGAVAVTS 311


>01_06_0909 -
           32903520-32903828,32903899-32903973,32904068-32904235,
           32904508-32904565,32904638-32904879,32905145-32905216,
           32905865-32905943,32906734-32907062,32907137-32907256,
           32907355-32907429,32908260-32908342,32908942-32908984,
           32909271-32909429,32910203-32910281,32910685-32910755,
           32910847-32910946,32911023-32911229,32911348-32911442,
           32912362-32912436,32912621-32912713,32913078-32913182,
           32913851-32913921,32914943-32915096,32916035-32916098,
           32916717-32916800,32917543-32917589,32918352-32918411,
           32918521-32918592
          Length = 1062

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 35  LDHFVSQLKKDESFTPHGKMLHA-FNVTPFDGESRSFEVYYCETSTQGFLEYHQRL 199
           L +FV Q   D+    HGK  +  F   P DG+  +  +YY  ++  G  E  +++
Sbjct: 133 LKYFVEQ---DDFIEIHGKRFYKPFVEKPIDGDDHNIMIYYPSSAGGGMKELFRKV 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,542,694
Number of Sequences: 37544
Number of extensions: 251440
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)