Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0534
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)                    36   0.023
SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)                 29   2.7  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           29   3.5  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   4.7  

>SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)
          Length = 252

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +2

Query: 20  GYITNLDHFVSQLKKDESFTPHGKMLHAF 106
           G++TN D F+++L +  SF P G+++H++
Sbjct: 119 GFLTNKDEFIAKLPEQSSFVPMGELIHSY 147


>SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)
          Length = 411

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 309 SIRYSCLCNCIQIL-CLSKPSTSTNLTSSYITALQENSEFV 428
           SI +SC C+ + +  C  K   S +   + +TA+Q+NS F+
Sbjct: 186 SIYFSCSCSMLVLTACYFKIFKSIHNHQARVTAMQQNSNFI 226


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 164 STQGF--LEYHQRLQTFLLWYVDAASFIDVDDVSGHSSQFLRNIKRVKAVFDTLQLPM 331
           +TQG+  L+  + ++T+LL Y+D   +   +++   + Q +RN  R +   + L +P+
Sbjct: 73  ATQGYGGLDVEEWVETYLLMYLDGDKY---NEIKRSAGQLVRNTDRNRVRLNYLPIPV 127


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 378 SWTLMVWIGIISVYSCIGSCSVSNTAFTRLIFLKNCEECPLTSSTSMNDAAS 223
           S T    IG+ S+ SC  + + + ++ + +I       CP  S T++ D+ S
Sbjct: 53  STTSATTIGVCSIISCTYTSNSATSSGSYIISSTTIGVCPTNSCTNLKDSTS 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,004
Number of Sequences: 59808
Number of extensions: 320350
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)