Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0534
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    29   3.1  
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    28   5.4  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    28   5.4  
AY962814-1|AAX81435.1|  189|Caenorhabditis elegans calexcitin 2 ...    27   9.5  
AL132860-22|CAB60520.1|  282|Caenorhabditis elegans Hypothetical...    27   9.5  
AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    27   9.5  

>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/73 (27%), Positives = 40/73 (54%)
 Frame = +2

Query: 26  ITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSFEVYYCETSTQGFLEYHQRLQT 205
           ++  + F  +L K + F P G+M+H F +     + +S+EVY     T+ F  + +R+QT
Sbjct: 240 VSGKEEFQQKLIKQKDFKPFGEMVHKFEL-----KGKSYEVYKVAEQTEEFNLFLERIQT 294

Query: 206 FLLWYVDAASFID 244
             +++++  S  D
Sbjct: 295 LGMFFIECCSLTD 307


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 185 ILENLELKSHNNILQMICSLHQKGLH*MHAAF 90
           ++ENLE   H + +++    HQK  H  HA F
Sbjct: 338 LVENLETICHRDNIRLFTDFHQKRKHPSHADF 369


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 37  GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 129
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 37  GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 129
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 37  GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 129
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AY962814-1|AAX81435.1|  189|Caenorhabditis elegans calexcitin 2
           protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 36  WITLCHN*RKMSHSHHMEKCCMHSM*PLLMERADHL 143
           WI LC + RK       +K  +  M  LL E  DHL
Sbjct: 86  WIQLCQSSRKSVREPAWQKAYVEYMFKLLDESGDHL 121


>AL132860-22|CAB60520.1|  282|Caenorhabditis elegans Hypothetical
           protein Y56A3A.29a protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 20  GYITNLDHFV-SQLKKDES-FTPHGKMLHAFNVTPFD 124
           GYI+ ++ F+ S++ K +  F P  ++   FN+ PFD
Sbjct: 77  GYISKIEKFLNSEVNKGKQVFPPPTQIFTTFNLLPFD 113


>AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical
           protein B0511.7 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 252 SSTSMNDAASTYHRRNVCKR*WYSRKP 172
           +ST+  D A  +H++   K  W  RKP
Sbjct: 271 TSTATEDEADDHHKKRYAKEAWPGRKP 297


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 500 VFNCEIYHFRYYL*SXSIRPVTFVHKF 420
           VFNC    F Y L +  IR +  +HKF
Sbjct: 269 VFNCSANAFVYILFNQEIRKILAMHKF 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,365
Number of Sequences: 27780
Number of extensions: 248882
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)