Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0534
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    29   1.7  
At2g14330.1 68415.m01602 hypothetical protein siimilar to At3g45...    29   2.9  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    28   5.0  
At5g38880.1 68418.m04702 expressed protein                             27   6.7  
At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    27   6.7  
At3g25490.1 68416.m03169 wall-associated kinase, putative simila...    27   8.8  
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu...    27   8.8  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   8.8  

>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 23  YITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSF 142
           YI NLD  VS+      F+  GK++ +     F GESR F
Sbjct: 20  YIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGF 59


>At2g14330.1 68415.m01602 hypothetical protein siimilar to
           At3g45350, At4g09400
          Length = 237

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 143 EVYYCETSTQGFLEYHQRLQTFLLWYVDAASFIDVDDVSGHSSQFLRNIKRVKAVFDTLQ 322
           EV YCE   Q  L++    Q+     + A   +    VSGHS   L +   V  VF  L+
Sbjct: 169 EVLYCEAHNQQALDFQAHFQSLCSPAIVAV--LVCWRVSGHSKPKLVSHGPVSKVFGNLE 226

Query: 323 LP 328
           +P
Sbjct: 227 IP 228


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 327 LCNCIQILCLSKPSTSTNLTSSYITALQENSE 422
           +C+C +  C+S+P T  ++ S    A+  N E
Sbjct: 108 ICSCCRAACISRPDTHADIDSWINFAMSRNVE 139


>At5g38880.1 68418.m04702 expressed protein 
          Length = 796

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +2

Query: 155 CETSTQGFLEYHQRLQTFLLWYVDAASFIDVDDVSGHSSQFLRNIKRVKAVFDTLQ 322
           C+ +T+ F EYH+RLQ ++    DA     V+  +   S    N +R +AV+ T++
Sbjct: 186 CDEATRIFAEYHKRLQVYVNQANDAQR--SVNSSNEVLSSLSANSER-EAVYSTVK 238


>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 348 LCLSKPSTSTNLTSSYITALQEN 416
           LC  +P +S +L S +++A++EN
Sbjct: 609 LCFERPQSSKHLVSYFVSAMKEN 631


>At3g25490.1 68416.m03169 wall-associated kinase, putative similar
           to wall-associated kinase 4 GB:CAA08793 from
           [Arabidopsis thaliana]
          Length = 433

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 348 LCLSKPSTSTNLTSSYITALQEN 416
           LC  +P TS +L S ++ A +EN
Sbjct: 309 LCFERPETSKHLVSYFVLATKEN 331


>At1g07350.2 68414.m00784 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 129

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 23  YITNLDHFVSQLKKDESFTPHGKMLHAFNV-TPFDGESRSF 142
           Y+T L H V++   ++ F   GK+     V  P+  ESR F
Sbjct: 48  YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 88


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 23  YITNLDHFVSQLKKDESFTPHGKMLHAFNV-TPFDGESRSF 142
           Y+T L H V++   ++ F   GK+     V  P+  ESR F
Sbjct: 78  YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,400,453
Number of Sequences: 28952
Number of extensions: 220707
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)