Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0530
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.2  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   8.2  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   8.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 471 NNGGQDXSLRCLNKN*NVFKNLWKKNCKPCDKXNTLRNLVNET 599
           NN     + R  N N N   N W+KN    ++ NT      ET
Sbjct: 366 NNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGET 408


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 184 NSFRASSMFSHSKEVSRENKYSKARLP 264
           +  R+SS FS+ K  S  + +S  +LP
Sbjct: 146 DELRSSSAFSYIKPSSERDYFSVKKLP 172


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 118  YPLIQYQPTSTTTKTE 165
            Y  + Y+P ST  KTE
Sbjct: 1233 YYTVYYKPVSTDDKTE 1248


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 274 RQLLLDLSKPKYGPPKYTLPDFLLCDRG 357
           ++LL   S+ +    K+T  DF   DRG
Sbjct: 261 KELLRFASESRGSVAKFTAADFFEIDRG 288


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 446 IILDVLNHSKHSLA 405
           I+LDV+NH  H  A
Sbjct: 476 ILLDVINHFPHFTA 489


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,598
Number of Sequences: 336
Number of extensions: 3207
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)