Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0530
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    29   0.53 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.6  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   3.7  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   4.9  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   4.9  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   4.9  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   4.9  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    25   8.6  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    25   8.6  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    25   8.6  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   8.6  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   8.6  

>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 322 YTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPI 471
           YT P  L CD+G+K   T I   F +IL ++     +    I FL V+PI
Sbjct: 150 YTYP--LACDKGKKTLSTSIAIEFFQILLKDTFPLLD--DWIAFLKVSPI 195


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 290  IYQNLNMVRPSTHYPTFYFATEERKRI 370
            I+  L +V+PS  +P FY  +EE+ +I
Sbjct: 1450 IHYVLKLVKPSKFFPLFYSDSEEKGKI 1476


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 145 STTTKTENVIIKKNSFRASSMFSHSKEVSREN 240
           ST   TEN  ++KN+F+  + F+ +   ++ N
Sbjct: 106 STRKDTENESLRKNNFKRRTQFAFTGRATKSN 137


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 446 IILDVLNHSKHSLAKILSKGLSISVLFFFSPLSQ----SKKSGNVYLGGPYLGFDR 291
           +I  +L   + S  K+  K +   VL     L +    +K SGN+YLGG + G  R
Sbjct: 3   LICSILPKKEPSYLKLWRKQVIYQVLTDRFALDEDNFYAKASGNLYLGGTWKGITR 58


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 435 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 346
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 435 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 346
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 435 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 346
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 435 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 346
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 373 TEIDNPFERILARECLEWFNTSKMIVFLHVNPITME 480
           T + +PF    ++E  E    S++I    VNP+T+E
Sbjct: 109 TLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 144


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 193 RASSMFSHSKEVSRENKYSKARLPHFERQLLLDLSKPKYGPPKYTL 330
           ++S  FS  +   R  +  K    ++ R+ L+  +K KY  PKY L
Sbjct: 8   KSSPYFSRYQTKYRRRREGKT--DYYARKRLIAQAKNKYNAPKYRL 51


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 193 RASSMFSHSKEVSRENKYSKARLPHFERQLLLDLSKPKYGPPKYTL 330
           ++S  FS  +   R  +  K    ++ R+ L+  +K KY  PKY L
Sbjct: 8   KSSPYFSRYQTKYRRRREGKT--DYYARKRLIAQAKNKYNAPKYRL 51


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = +1

Query: 112 NNYPLIQYQPTSTTTKTENVIIKKNSFRASSMFSHSKEVSRENKYSKARLPHFERQLLLD 291
           +N   IQY  T      ++  I+ N F +  + S SK  S E  +S     H +    + 
Sbjct: 492 SNGKSIQYYSTLFVRLIQSCSIQ-NLFDSEIVQSESK--STEALHSGNLTEHLKTVESI- 547

Query: 292 LSKPKYGPPKYTLPDFL---LCDRGEKKNKTEIDNPFERILARECLE 423
           LSK ++   +Y + + +   L  R  K+NKTE DN F  IL +  LE
Sbjct: 548 LSKSRH--EEYRIANHIVAYLLSRSLKQNKTESDNSF-AILTKILLE 591


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 424  WFNTSKMIVFLHVNPITMEDKTPVYAALIRIKMYLRTYGKKI 549
            W  T K    +HV+    +  +PV  AL    +Y+RT  + I
Sbjct: 892  WLTTLKKPQSIHVSGRFPQVSSPVNTALSNSLLYIRTLSRVI 933


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,564
Number of Sequences: 5004
Number of extensions: 53902
Number of successful extensions: 157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)