Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0530
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0013 - 13743730-13744239,13745337-13745564,13745656-13745733     29   2.2  
10_08_0609 - 19196705-19196845,19196927-19196984,19197072-191971...    28   5.1  
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173...    28   5.1  
03_05_0762 - 27524596-27524700,27525721-27526230                       27   8.9  

>03_03_0013 - 13743730-13744239,13745337-13745564,13745656-13745733
          Length = 271

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +1

Query: 142 TSTTTKTENVIIKKNSFRASSMFSHSKEVSRENKYSKARL---PHFERQLLLDLSKPKYG 312
           TST TK  +VI  +  +R+    +  K  S ++   + RL   PH +R  ++ L++   G
Sbjct: 207 TSTATK-RSVIGDEEGYRSRGWVTGEKTWSGQHHLPRVRLKGKPHTQRNFVMPLAQSAKG 265

Query: 313 PPK 321
            PK
Sbjct: 266 EPK 268


>10_08_0609 -
           19196705-19196845,19196927-19196984,19197072-19197142,
           19197352-19197428,19197500-19197582,19197659-19197718,
           19198007-19198142,19198247-19198317,19198560-19198651,
           19198785-19198882,19199012-19199164,19199254-19199419,
           19200112-19200510,19200592-19200673,19200739-19200962
          Length = 636

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 212 VTAKRFRGKINIQRQGCLISNGSYY-LIYQNLNMVRPSTHYPTFYFATEERKRIKQK 379
           + A    G  N+     ++ + SY  L+ Q L+ +  +T+YP FY +T +    K K
Sbjct: 580 IQAVNVPGVENVDASELIVGHSSYLTLVNQILDQLELNTYYPVFYPSTPKCGTPKSK 636


>02_01_0262 -
           1734447-1735090,1735219-1735367,1735458-1735633,
           1735719-1735853,1737039-1737120,1737307-1737461
          Length = 446

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = +2

Query: 98  TLVFRTIIL*YNINPHLQPLKLRMSSLKKILLEPRACLVTA--KRFRGKINIQRQGCLIS 271
           TL+  TI   +NI    +PLKL +  L    +E +   V       R  + +Q +   I+
Sbjct: 139 TLLLSTIRFDFNIQHPYEPLKLALKKLGIFQMEVKQVAVNLINDAIRTTLVVQFKPHYIA 198

Query: 272 NGSYYLIYQNLNMVRPS---THYPTFYFATEERKRIKQKLT 385
            GS YL  +  N   PS     +  F  A ++ + + Q++T
Sbjct: 199 AGSLYLAAKFNNFRLPSDGKVWWHEFDVAPKQLQAVIQQMT 239


>03_05_0762 - 27524596-27524700,27525721-27526230
          Length = 204

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 316 PKYTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNT 435
           PKY LP  L+ D     +  E    FE  LA  C  WF +
Sbjct: 39  PKYGLPRGLIPDSVASYSFDEATGEFEIHLAGTCYVWFGS 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,208
Number of Sequences: 37544
Number of extensions: 288041
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)