Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0530
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)                   33   0.24 
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)                    28   6.9  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)                 27   9.1  

>SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)
          Length = 626

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +2

Query: 158 KLRMSSLK-KILLEPRACLVTAKRFRGKINIQRQGCLISNGSYYLIYQNLNMVRPSTHYP 334
           ++R  SL  K+  +P   L+TA+    K+ +   G   SNG      ++ N+ R +T   
Sbjct: 131 RVRQFSLNMKVTSDPEEALITAE----KLGVD--GFTASNGWLQCFKEHYNLQRMATAGE 184

Query: 335 TFYFATEERKRIKQKLTIPSKGFWPENVWN 424
               ++E  +   +++   ++G+ PENVWN
Sbjct: 185 DGDVSSETLESWNERVREITRGWKPENVWN 214


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -3

Query: 505 RQRKLXSCPPLLLGLHVRTQSFWMY*T------IPNILWPKSFR 392
           R R++   PP  + LH+   S W+Y T         + WP++FR
Sbjct: 151 RPRRIIYSPPGAISLHIPGNSHWLYETPRSDVVFTLLFWPRAFR 194


>SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 412 LWPKSFRRDCQFLFYSFSLLCRKV 341
           +W   +   C ++ YSFSL+CRKV
Sbjct: 69  IWIVIYTWQCLWIVYSFSLICRKV 92


>SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)
          Length = 349

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 349 DRGEKKNKTEIDNPFERILARECLEW 426
           D G+K+   E+   FE +L R+CL+W
Sbjct: 199 DEGKKEESLEL--AFEYLLTRDCLQW 222


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 124 LIQYQPTSTTTKTENVIIKKNSFRASSMFSHSKEVSRENKYSK 252
           L+   PTSTT K++  + K++S+ AS   S +++ S +  + K
Sbjct: 785 LLSQNPTSTTVKSKPEVKKESSYDASC--SDNEQSSEQGSHEK 825


>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
          Length = 574

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +1

Query: 118 YPLIQYQPTSTTTKTENVIIKKNS----FRASSMFSHSKEVSRENKYSKARLPHFERQLL 285
           +PL  Y+P   TTKT  V  K  +      A+ +   SK + RENK     L   E Q L
Sbjct: 125 FPLNPYKPAEITTKTLAVTFKPRTPLEEEVAAILRGSSKVIERENK----ELTEEEEQAL 180

Query: 286 L--DLSKPKY 309
           L  DL +  Y
Sbjct: 181 LAMDLEESYY 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,945
Number of Sequences: 59808
Number of extensions: 357691
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)