Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0530
         (612 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ926092-1|ABI50621.1|  126|Homo sapiens immunoglobulin heavy ch...    30   7.4  
AB209563-1|BAD92800.1|  393|Homo sapiens Hypothetical protein DK...    30   7.4  

>DQ926092-1|ABI50621.1|  126|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 126

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 430 NTSKMIVFLHVNPITMEDKTPVYAALIRIKMYLRTYGKKIVSLATXGT 573
           +TSK    L +N +T ED    Y A  R+  Y+  +GK      + G+
Sbjct: 76  DTSKNQFSLQLNSVTPEDTAVYYCARARMDFYMDVWGKGTTVTVSSGS 123


>AB209563-1|BAD92800.1|  393|Homo sapiens Hypothetical protein
           DKFZp686I04222 variant protein.
          Length = 393

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 461 TCKNTIILDVLNHSKHSLAKILSK--GLSISVLFFFSPLSQSKKSGNVYLG 315
           +C  + I+DVL  +  + A  L K  G   S   FFSP+S S     VY+G
Sbjct: 16  SCSRSAIMDVLAEANGTFALNLLKTLGKDNSKNVFFSPMSMSCALAMVYMG 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,975,624
Number of Sequences: 237096
Number of extensions: 1736067
Number of successful extensions: 7085
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7085
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)