Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0530
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-4|AAA96286.2|  558|Caenorhabditis elegans Suppressor of p...    28   6.0  
AY160228-1|AAN62581.1|  558|Caenorhabditis elegans suppressor of...    28   6.0  
AF548624-1|AAN59932.1|  558|Caenorhabditis elegans suppressor of...    28   6.0  
Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U53180-4|AAA96286.2|  558|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 1 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 343 LCDR-GEKKNKTEIDNPFERILARECLEWFN 432
           +CD  GEK    +I+N   R   R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306


>AY160228-1|AAN62581.1|  558|Caenorhabditis elegans suppressor of
           presenilin 1 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 343 LCDR-GEKKNKTEIDNPFERILARECLEWFN 432
           +CD  GEK    +I+N   R   R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306


>AF548624-1|AAN59932.1|  558|Caenorhabditis elegans suppressor of
           presenilin defect protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 343 LCDR-GEKKNKTEIDNPFERILARECLEWFN 432
           +CD  GEK    +I+N   R   R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306


>Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical
           protein M110.3 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 260 CLISNGSYYLIYQNLNMVRPSTHYPTFYFATEERKRIKQKLTIPSKGFWPE 412
           C +++G  +  Y NL +   S+ +       EER+ IK +L  P+   W E
Sbjct: 133 CFVASGRRFCYYGNLGLRLASSIFRVSIDDYEERREIKARL--PTDMHWEE 181


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
            C05C10.2b protein.
          Length = 1553

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 77   LVFNKHVTLVFRTIIL*YNINPHLQPLKLRMSSLKKILLEPRACLVTAKRFRGKINIQRQ 256
            ++F  H+  ++  +   ++  PH Q L      + K    P   +VTA   +G +NI R 
Sbjct: 1147 MLFGDHIAQIYDKLSADFSRAPHAQTLVEAFFMIYK----PDLVMVTADSAKGLLNILRD 1202

Query: 257  GCLI 268
             C +
Sbjct: 1203 VCAV 1206


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
            C05C10.2a protein.
          Length = 1551

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 77   LVFNKHVTLVFRTIIL*YNINPHLQPLKLRMSSLKKILLEPRACLVTAKRFRGKINIQRQ 256
            ++F  H+  ++  +   ++  PH Q L      + K    P   +VTA   +G +NI R 
Sbjct: 1147 MLFGDHIAQIYDKLSADFSRAPHAQTLVEAFFMIYK----PDLVMVTADSAKGLLNILRD 1202

Query: 257  GCLI 268
             C +
Sbjct: 1203 VCAV 1206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,516
Number of Sequences: 27780
Number of extensions: 291643
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)