Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0530
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.0  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   1.8  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    23   1.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 237 FPRNLFAVTKHARGSKRIFFNDDILSFSG 151
           +PR++F  T   + S  IF +DD    +G
Sbjct: 388 YPRSIFRQTDDHQNSPSIFISDDNQKLTG 416


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 429 KPFQTFSGQNPF 394
           +PF TF GQ PF
Sbjct: 32  RPFPTFPGQGPF 43


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 429 KPFQTFSGQNPF 394
           +PF TF GQ PF
Sbjct: 18  RPFPTFPGQGPF 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,509
Number of Sequences: 438
Number of extensions: 3934
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)