Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0530
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60890.1 68416.m06812 hypothetical protein 30 1.1
At5g62240.1 68418.m07815 expressed protein various predicted pro... 29 2.4
At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g281... 29 3.2
At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.2
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P... 28 5.6
At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containi... 28 5.6
At5g53520.1 68418.m06651 oligopeptide transporter OPT family pro... 27 7.4
At2g10350.1 68415.m01087 Ulp1 protease family protein similar to... 27 7.4
At1g70340.1 68414.m08092 expressed protein 27 7.4
At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NA... 27 7.4
At1g44880.1 68414.m05142 Ulp1 protease family protein similar to... 27 7.4
At3g46240.1 68416.m05005 protein kinase-related similar to light... 27 9.8
>At3g60890.1 68416.m06812 hypothetical protein
Length = 105
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 178 KKNSFRASSMFSHSKEVSRENKY--SKARLPHFERQLLLDLSKPKYGPPKYTL 330
K+ R +F ++ + REN+ KA L H E L L PKY P +L
Sbjct: 51 KEMEMRNLKLFVENQSIIRENEALKKKALLLHHENNALFALLHPKYSPVSTSL 103
>At5g62240.1 68418.m07815 expressed protein various predicted
proteins, Arabidopsis thaliana; expression supported by
MPSS
Length = 366
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +2
Query: 83 FNKHVTLVFRTIIL*YNINPHLQPLKL-RMSSLKKILLEPRACLVTAKR---FRGKINIQ 250
F ++V V + + + N Q K+ +SS K+ + L TA+R R K+N Q
Sbjct: 164 FGENVAPVLVSKLQNQDTNRQKQEAKVAHVSSRAKLTVPKEPNLRTAERSERHRSKVNTQ 223
Query: 251 RQGCLISNGSYYLIYQNLNMVRPST 325
R+ SN ++ +N+N+ ST
Sbjct: 224 REQIATSNSKRHIRNKNINLEPVST 248
>At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g28170,
At1g35110, At1g44880, At4g19320, At5g36020, At4g03970,
At3g43010, At2g10350; contains Pfam profile PF02902:
Ulp1 protease family, C-terminal catalytic domain
Length = 889
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 234 PRNLFAVTKHARGSKRIFFNDDILSF 157
P LFA+ ++ RG I+ DILSF
Sbjct: 18 PNRLFAIDQYPRGRLNIYSRPDILSF 43
>At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 481
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 313 PPKYTLPDFLLCDRGEKKNKTEIDNPFERILARE--CLEWFNTS--KMIVFLHVNPITM 477
PP Y++ L ++ E +EI + E CL+W NT +V+++ IT+
Sbjct: 248 PPVYSIGPLHLLEKQESGEYSEIGRTGSNLWREETECLDWLNTKARNSVVYVNFGSITV 306
>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28170, At1g35110,
At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
At2g10350
Length = 1043
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 234 PRNLFAVTKHARGSKRIFFNDDILSF 157
P LFA ++ RG I+ DILSF
Sbjct: 18 PNRLFATDQYPRGKLNIYSRPDILSF 43
>At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 544
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 340 LLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPITMEDKTPVYAALIRIK 519
+LC G K E+ + +RI + CL + +VF + + +E+ + L+
Sbjct: 243 VLCKEGRLK---EVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKRLLMKN 299
Query: 520 MYLRTYGKKIVSLA 561
M + T G IV A
Sbjct: 300 MVVDTIGYSIVVYA 313
>At5g53520.1 68418.m06651 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 733
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 3 RYVMGNWKKIEINS-IIYSNFKNIPVWYLIS 92
R G KK++I++ I+ N+K +P+W+ +S
Sbjct: 388 RGAFGKNKKMDIHTKIMKRNYKEVPLWWFLS 418
>At2g10350.1 68415.m01087 Ulp1 protease family protein similar to
At5g28170, At1g35110, At1g44880, At3g42530, At4g19320,
At5g36020, At4g03970, At3g43010 ; contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain
Length = 1110
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 234 PRNLFAVTKHARGSKRIFFNDDILSF 157
P LFA ++ RG I+ DILSF
Sbjct: 18 PNRLFATDQYPRGRLNIYSRPDILSF 43
>At1g70340.1 68414.m08092 expressed protein
Length = 510
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 343 LCDRGEKKNKTEIDNPFERIL-ARECLEWFNTSKMI 447
+CDR KKN + +PF+ L A+E + +TSK I
Sbjct: 223 VCDRQAKKNNASLFSPFKSSLEAQEDVVPLSTSKKI 258
>At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase SP|Q40345 from [Medicago
sativa]
Length = 410
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 160 TENVIIKKNSFRASSMFSHSKEVSRENKYSKARLPHFERQLLLDL 294
T+N I+KK R +F E S ++KY A + +E +L+ D+
Sbjct: 211 TKNTILKKYDGRFKDIFQEVYEASWKSKYDAAGI-WYEHRLIDDM 254
>At1g44880.1 68414.m05142 Ulp1 protease family protein similar to
At5g28170, At1g35110, At3g42530, At4g19320, At5g36020,
At4g03970, At3g43010, At2g10350; contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain
Length = 1038
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 234 PRNLFAVTKHARGSKRIFFNDDILSF 157
P LFA ++ RG I+ DILSF
Sbjct: 18 PNRLFATDQYPRGRLNIYSRPDILSF 43
>At3g46240.1 68416.m05005 protein kinase-related similar to light
repressible receptor protein kinase (GI:1321686)
[Arabidopsis thaliana]
Length = 441
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 395 SKGLSISVLFFFS-PLSQSKKSGNVYLGGPYLG 300
S G+ + + +FS PL S +S N++ GG +G
Sbjct: 217 SAGVPVYLAMYFSEPLESSLRSFNIFFGGKQVG 249
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,388
Number of Sequences: 28952
Number of extensions: 262171
Number of successful extensions: 714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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