Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0527
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   0.64 
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    28   0.64 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   4.5  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   6.0  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   7.9  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   7.9  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   SLPRPSEPKPTSPARGAPCRPTNEALARR 94
           S+ +  EP P S A  +P + + EALA R
Sbjct: 58  SIQKKKEPSPASSASASPVKKSAEALAER 86


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 287 LLSKALGVDXILIVIICVNVSPKYGSDTLINLGYCLRSLVSTVSPKNTGDTANR 448
           L S  L +  ++++    NV    G   L N GY    L+ T+   +T   ANR
Sbjct: 163 LFSLLLYLVGLILMAASTNVQTYAGGSVLYNAGYTGVELIMTIFMADTSSMANR 216


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +2

Query: 353 KYGSDTLINLGYCLRSLVSTV 415
           ++G+  L++L +CL++L+STV
Sbjct: 934 EFGNGPLVSLIFCLQNLLSTV 954


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 115 DGGSVTTTPRQSLVCWSAGCAAC 47
           DG  V   P + L C  +GCA C
Sbjct: 50  DGIRVPPKPEEPLNCCQSGCAIC 72


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  RGAPCRPTNEALARRGRHGTTVAYIV 127
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  RGAPCRPTNEALARRGRHGTTVAYIV 127
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,751
Number of Sequences: 5004
Number of extensions: 29828
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)