Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0527
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               31   0.50 
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 28   3.5  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     28   3.5  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_9676| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_2153| Best HMM Match : Laminin_G_2 (HMM E-Value=0.36)               28   4.6  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   6.1  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   6.1  
SB_52310| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 287 LLSKALGVDXILIVIICVNVSPKYGSDTLINLGYCLRS 400
           LL+ +LG D + ++I C++ S    SDTL  L Y  R+
Sbjct: 127 LLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRA 164


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 14  PRPSEPKPTSPARG-APCRPTNEAL 85
           P PS P PT P R   P  P++EAL
Sbjct: 298 PTPSPPTPTPPPRSPTPLHPSSEAL 322


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   GTSLPRPSEPKPTSPARGAPCR 67
           GT++P  SE KPT P  G P R
Sbjct: 393 GTNVPFTSESKPTEPTPGMPFR 414


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 14  PRPSEPKPTSPARGAPCR 67
           PRPS PKPT P     CR
Sbjct: 299 PRPSRPKPTLPPFAEKCR 316



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 14  PRPSEPKPTSPARGAPCR 67
           PRPS PKPT P     C+
Sbjct: 79  PRPSRPKPTLPPFAQKCK 96



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 14  PRPSEPKPTSPARGAPCR 67
           PRPS PKPT P     C+
Sbjct: 134 PRPSRPKPTLPPFAQKCK 151



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 14  PRPSEPKPTSPARGAPCR 67
           PRPS PKPT P     C+
Sbjct: 189 PRPSRPKPTLPPFAQKCK 206



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 14  PRPSEPKPTSPARGAPCR 67
           PRPS PKPT P     C+
Sbjct: 244 PRPSRPKPTLPPFAQKCK 261


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +2

Query: 320 LIVIICVNVSPKYG----SDTLINLGYCLRSLVSTVSPKNTGDT 439
           L V ICV +  KYG     D L N G+C     +T+  KN   T
Sbjct: 390 LQVSICVTLDHKYGLRDLIDLLSNFGFCASYFEATLYKKNAAVT 433


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 2   GTSLPRPSEPKPTSPARGAP 61
           GT++P  SE KPT P  G P
Sbjct: 168 GTNVPFTSESKPTEPTPGCP 187


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +2

Query: 2    GTSL-PRPSEPKPTSPARGAP-CRPTNEALARRGRHGTTVAYIVDDSGSDHKFP 157
            GT + PRP   +P +        R T  ALA RG H   V     D G   KFP
Sbjct: 1571 GTDIGPRPESLQPWATRHSVDVARSTGPALASRGTHSAPVFPTNSDQGR-FKFP 1623


>SB_9676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 2   GTSLPRPSEPKPTSPARGAP 61
           GT++P  SE KPT P  G P
Sbjct: 51  GTNVPFTSESKPTEPTPGCP 70


>SB_2153| Best HMM Match : Laminin_G_2 (HMM E-Value=0.36)
          Length = 369

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 2   GTSLPRPSEPKPTSPARGAP 61
           GT++P  SE KPT P  G P
Sbjct: 338 GTNVPFTSESKPTEPTPGCP 357


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 14  PRPSEPKPTSPARG 55
           PRP+ PKPT+P +G
Sbjct: 338 PRPTPPKPTAPPKG 351


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 14   PRPSEPKPTSPARG 55
            PRP+ PKPT+P +G
Sbjct: 3239 PRPTPPKPTAPPKG 3252


>SB_52310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 317 ILIVIICVNVSPKYGSDTLINLGYCLRSLVSTVSP 421
           +LIV       P Y   T+ N G  L +L STV+P
Sbjct: 244 VLIVYTVAQYGPTYIGSTIHNAGIILLTLNSTVNP 278


>SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 312 STPKALDSNPYYWKCFTSLN 253
           S  K L + PY+W+CF  LN
Sbjct: 146 SPEKPLANVPYFWECFPFLN 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,113,819
Number of Sequences: 59808
Number of extensions: 228181
Number of successful extensions: 969
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)