Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0527
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    28   4.1  
U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   SLPRPSEPKPTSPARGAPCRP 70
           S P PS P+P SP  G P  P
Sbjct: 279 SAPSPSPPRPLSPVFGQPAPP 299


>U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical
           protein C03B1.7 protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 172 NNDYVSNIQCRIY*CKTSQSYLPHFISI*TSKALPVIWVTV*GFR--CRXYSNRHYMCKC 345
           NN+   +    +     S+   P+F S    K  P++ V    F+  C  YSN  Y  K 
Sbjct: 688 NNEVFESASEELEMFMNSEGIAPNFHSEFAKKTSPLL-VGNAEFKDFCSKYSNSKYDNKT 746

Query: 346 ISKIRQRYIN 375
           ISK+ ++YI+
Sbjct: 747 ISKLVKKYID 756


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,548,928
Number of Sequences: 27780
Number of extensions: 165111
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)