Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0527
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.1  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 42  LLHAAHPADQQTRLWRG 92
           LLH   P D   RLW G
Sbjct: 463 LLHLIFPPDIAKRLWLG 479


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 60  GAPRAGEVGFGSEGL 16
           G P   E+GF +EGL
Sbjct: 209 GVPTLEELGFDTEGL 223


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 2   GTSLPRPSEPKPTS 43
           G SLP P  P PT+
Sbjct: 153 GGSLPTPVTPTPTT 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,822
Number of Sequences: 438
Number of extensions: 2472
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)