Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0527
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16990.1 68415.m01959 expressed protein                             28   2.9  
At3g28790.1 68416.m03593 expressed protein                             28   3.8  
At2g16970.1 68415.m01955 expressed protein  ; expression support...    27   8.8  

>At2g16990.1 68415.m01959 expressed protein
          Length = 456

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 284 GLLSKALGVDXILIVIICVNVSPKYGSDTLINLGYCLRSLVSTV 415
           G    A+G+  ++++ +  N+S +YG  T++ L  CL S+V  V
Sbjct: 53  GFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCL-SIVPPV 95


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 8   SLPRPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGS 142
           S P PS P P++P    P  P+  A  +    G+  A +  +S S
Sbjct: 294 STPTPSTPTPSTPTPSTPA-PSTPAAGKTSEKGSESASMKKESNS 337


>At2g16970.1 68415.m01955 expressed protein  ; expression supported
           by MPSS
          Length = 414

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 284 GLLSKALGVDXILIVIICVNVSPKYGSDTLINLGYCLRSL 403
           G+    +G+  ++++ +  N+S +YG  TL+ L  CL  L
Sbjct: 54  GVEQVTVGLGTMVMMPVIGNLSDRYGIKTLLTLPMCLSIL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,040,941
Number of Sequences: 28952
Number of extensions: 154422
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)