Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0526
         (394 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   2.5  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   2.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.8  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 336 VFTPGQQFNEPLSAIDETAELLGHLLVAIA 247
           +  PG++F+E +  I   + L+ H L+ +A
Sbjct: 110 ILRPGKRFDEYIYGIIFLSILIPHFLLPVA 139


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 336 VFTPGQQFNEPLSAIDETAELLGHLLVAIA 247
           +  PG++F+E +  I   + L+ H L+ +A
Sbjct: 110 ILRPGKRFDEYIYGIIFLSILIPHFLLPVA 139


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -1

Query: 289 RDCRTSWTSPCCHRHETLEL-TPLTTWITIC 200
           R CR       C+ H TLEL T L     +C
Sbjct: 110 RACREGEPPRICYYHFTLELYTVLGAACQVC 140


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -1

Query: 289 RDCRTSWTSPCCHRHETLEL-TPLTTWITIC 200
           R CR       C+ H TLEL T L     +C
Sbjct: 110 RACREGEPPRICYYHFTLELYTVLGAACQVC 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,999
Number of Sequences: 336
Number of extensions: 1513
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)