Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0526
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   2.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   2.4  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   3.2  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.2  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   4.2  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   5.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   5.5  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    25   5.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   5.5  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    24   7.3  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    24   9.7  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    24   9.7  

>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 59  TNDNEKNMLLHYVKSFKEGDLSEHKEGS 142
           +N+NEK+     +K  K GD ++  EGS
Sbjct: 182 SNENEKSAAETSIKEDKNGDAAKKNEGS 209


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 72   RRTCSCIMLKVLKKAILVSIKREADFG*EIRDLLL 176
            + T  C+M+K +KK + + I+   DF  +  ++ L
Sbjct: 1290 KATEQCLMVKYIKKDLEIEIEESCDFSIQTEEIHL 1324


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 83  LLHYVKSFKEGDLSEHKEGSRFWIRDKGPIIETYQ 187
           L+H+  SFK G+    K+     I +K PI ET++
Sbjct: 116 LIHWPVSFKTGEDKFPKDKDGNLIYEKNPIEETWK 150


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 211 ITICLNETLICLNNRSLISYPK 146
           I IC N + + LN  +++ YPK
Sbjct: 85  IAICANHSTVLLNCPTVLGYPK 106


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 314 LMNLSAPSTRLPNFLDISLLPSPRNPR 234
           +M+ ++ ++ LP++ D   LPSPR  R
Sbjct: 52  IMSSTSIASSLPSYQDTFFLPSPRKRR 78


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 23  VNEHLTTAQEY-ATNDNEKNMLLHYVKSFKE 112
           V + L++ Q Y +++D  KN+ LHY+   +E
Sbjct: 548 VFKELSSIQSYISSHDKSKNLDLHYLVDIRE 578


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 11  ELKIVNEHLTTAQEYATNDNEKNMLLHYVKS 103
           EL  +N+H+    E+  + + +NM   ++KS
Sbjct: 521 ELHNLNQHIQQIDEWLRSSDNENMASEHIKS 551


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = +2

Query: 125 EHKEGSRFWIRDKGPIIETYQGFIETYRDPSGQRXEFEGFVAM--ATRRCPRSSAVSSMA 298
           E + G R W   K        G   TYR+  G+R  +   ++   + +R P +    + +
Sbjct: 51  EREAGMRRWTDGKSWSASRVSGSFLTYREMEGKRKPYHHGLSTDGSLKRSPSADTTGNSS 110

Query: 299 LRGSLNCCPGVKTXKXIRSCD 361
           L    N   G  +     S D
Sbjct: 111 LNAYSNEDSGAASLSDEESVD 131


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 2   IRHELKIVNEHLTTAQEYATNDNEKNMLLHYVKSFKEGDLS 124
           +  +L I N  L  +     N   +N+LL  VK   + DLS
Sbjct: 763 VSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKADLS 803


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 197 ETYRDPSGQRXEFEGFVAMATRRCPRSSAVSS 292
           +TY DP G     EG  + A  RC +   V+S
Sbjct: 189 QTYFDPEGIATASEGCKSNALMRCCKDLGVAS 220


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = +2

Query: 26  NEHLTTAQEYATNDNEKNM--LLHYVKSFKEGDLSEHKEGS 142
           N H     E  TNDN KN   L          + S  K+GS
Sbjct: 39  NSHTKNKLESGTNDNNKNKEDLSKLYSDVTTSNTSHEKDGS 79


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 239 GFVAMATRRCPRSSAVSSMALRGSLN 316
           GFV  A + CP ++ VS  ++R  ++
Sbjct: 280 GFVETAKKFCPENTEVSDASIRKEIS 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,705
Number of Sequences: 5004
Number of extensions: 25991
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)