Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0526
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    29   1.8  
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    27   5.4  
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867...    27   5.4  

>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 71  EKNMLLHYVKSFKEGDLSEH---KEGSRFWIRDKGPIIETYQGFIETYRDPSGQRXEFEG 241
           E+   LH +++ ++G    H    + S F+ R     ++  +  ++ Y D SGQ+   + 
Sbjct: 341 EQQGFLHGIRNGRQGPPISHLLFADDSIFFPRSDHRSVQAIKSTLQAYCDASGQKINMQK 400

Query: 242 FVAMATRRCP 271
                 +RCP
Sbjct: 401 SSIFFGKRCP 410


>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 377 RLVKSGRRXESXXKSSPQGNSLMNLSAPSTRLPNFLDISLLPSPRNPRTH 228
           R   +G       +S+P  +S+++LSA ST L +F     +  PR  R H
Sbjct: 260 RDASAGTSKPPASESTPLLSSVIHLSAESTALSSFRSTVAVSPPRPIRRH 309


>02_05_0083 +
           25684816-25685383,25685474-25685499,25686325-25686718,
           25687726-25687814,25687924-25687980,25688341-25688408,
           25688511-25688617,25688698-25688768,25688844-25688912
          Length = 482

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 270 GHLLVAIATKPSNSXR*PLGSRY 202
           G LLV+I T P  S   P+G RY
Sbjct: 270 GELLVSIFTVPERSEEEPIGKRY 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,290
Number of Sequences: 37544
Number of extensions: 173068
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)