Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0526
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)              106   7e-24
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    27   5.4  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)                 26   9.5  
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)                    26   9.5  

>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score =  106 bits (254), Expect = 7e-24
 Identities = 47/83 (56%), Positives = 62/83 (74%)
 Frame = +2

Query: 14  LKIVNEHLTTAQEYATNDNEKNMLLHYVKSFKEGDLSEHKEGSRFWIRDKGPIIETYQGF 193
           LK V ++L  A+ +A+N+NE  ML HYV SF  G +  HK+GSR WIRDKGP++ETY GF
Sbjct: 47  LKKVVDNLIMAKGFASNENEVAMLDHYVHSFTTGSVEAHKDGSRHWIRDKGPVVETYIGF 106

Query: 194 IETYRDPSGQRXEFEGFVAMATR 262
           IE+YRDP G R E+EGFV++  +
Sbjct: 107 IESYRDPFGVRAEYEGFVSIVNK 129



 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 28/52 (53%), Positives = 30/52 (57%)
 Frame = +1

Query: 238 GFRGDGNKEMSKKFGSLVDGAERFIKLLPWGEDLXXDSXLRPDFTSLDVLTF 393
           GF    NK MS KF  LV  AE  +  LPW      D+ LRPDFTSLDVL F
Sbjct: 122 GFVSIVNKSMSAKFADLVSSAETLLPQLPWPSSYEKDTFLRPDFTSLDVLGF 173


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 208  TICLNETLICLNNRSLISYPKSAS 137
            TIC     IC +N + ISYP+ A+
Sbjct: 1919 TICRQNASICPHNGTCISYPEDAT 1942


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 214  WITICLNETLICLNNRSLI 158
            W+ +C+ ++ +C+ +RSLI
Sbjct: 1045 WVLLCMRDSKVCVYHRSLI 1063


>SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)
          Length = 1037

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 17  KIVNEHLTTAQEYATNDNEKNMLLHYVKSFKE 112
           K ++E L   +   TND+E+  L HY+K  +E
Sbjct: 190 KAISEQLVPEE---TNDDEREELFHYIKENQE 218


>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
          Length = 628

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 89  ARACSSHYHLLRTPELWLDVRXQSS 15
           A+ C++H+  L   E+W DV+  S+
Sbjct: 244 AQKCTAHFTALMYTEIWCDVQRHSA 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,116
Number of Sequences: 59808
Number of extensions: 196075
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)