Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0526
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 241 TLELTPLTTWITICL 197
           T+ L  L+ WIT+C+
Sbjct: 319 TMILVTLSIWITVCV 333


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 11  ELKIVNEHLTTAQEYATNDNEKNMLLHYVKSFKE 112
           E KI++ + + +  Y  N+N  N   +Y  ++K+
Sbjct: 78  EPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKK 111


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 211 ITICLNETLICLNNRSLISYPKSASLFMLTKIAF 110
           IT+  NE  I +NN + +        F L + AF
Sbjct: 369 ITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,367
Number of Sequences: 438
Number of extensions: 1861
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)