Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0526
         (394 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57570.1 68414.m06533 jacalin lectin family protein similar t...    32   0.16 
At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    31   0.37 
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    31   0.37 
At5g66130.1 68418.m08331 cell cycle checkpoint protein-related w...    29   1.1  
At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end...    28   2.6  
At2g03980.1 68415.m00365 GDSL-motif lipase/hydrolase family prot...    27   3.4  
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    27   3.4  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    27   4.5  
At5g38550.1 68418.m04661 jacalin lectin family protein similar t...    27   6.0  
At5g38540.1 68418.m04660 jacalin lectin family protein similar t...    27   6.0  
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)...    26   7.9  
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea...    26   7.9  
At1g50040.1 68414.m05615 expressed protein                             26   7.9  

>At1g57570.1 68414.m06533 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 614

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 26  NEHLTTAQEYATNDNEKNMLLHYVKSFKEGDLSEHKEGSRFWIRDKGPIIETYQGFIE 199
           NEHL   + Y  +++     L +  + K  +L  +K+G +F + DK   I  + G+ +
Sbjct: 245 NEHLVCVEGYYDDESGVIQALQFKTNIKTSELLGYKKGKKFSLVDKRKKIVGFHGYAD 302


>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -3

Query: 365 SGRRXESXXKSSPQGNSLMNLSAPSTRLPNFLDISLLPSPRNPR 234
           SG   +S  +SS + +SL     PS  LP F  +SLLPS  +P+
Sbjct: 268 SGNSLKSFSQSSGR-SSLRPSIPPSLTLPKFSSLSLLPSQTSPK 310


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 265 SPCCHRHETLELTPLTTWITICLNETLICLNNRSLIS--YPKSASLFMLTKIA 113
           +P  HR   ++  PL+  +  CL+  L  L + SLIS  +P SA+   LTK++
Sbjct: 642 TPAAHRGSVVQSRPLSPVVLPCLHRHL--LESMSLISDIFPSSATSSELTKLS 692


>At5g66130.1 68418.m08331 cell cycle checkpoint protein-related weak
           similarity to cell cycle checkpoint protein RAD17 [Homo
           sapiens] GI:4102916
          Length = 599

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 92  NARACSSHYHLLRTPELW 39
           N + CSS +H++R P+LW
Sbjct: 507 NKQPCSSRWHVIRKPKLW 524


>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 497

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +2

Query: 53  YATNDNEKNMLLHYVKSFKEGDLSEHKEGSRFWIRDKGPIIETYQGFIETYRDPSGQRXE 232
           Y++ND+ KN +  +   F  G   E   G+  W+R K    E+Y  +IE+ R+P G    
Sbjct: 220 YSSNDDIKNDVCPFYCDFN-GFQDELLWGAA-WLR-KATGDESYLNYIESNREPFGANDN 276

Query: 233 FEGF 244
            + F
Sbjct: 277 VDEF 280


>At2g03980.1 68415.m00365 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich protein APG from
           Brassica napus (SP|P40603 ), Arabidopsis thaliana
           (GI:22599); contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 367

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 263 RCPRSSAVSSMALRGSLNCCPGVKTXKXIRSCDP 364
           R P S+ V S  L  +  CCP V     + SC P
Sbjct: 290 RGPSSNQVGSSLLNVTSPCCPNVYDGGQLTSCKP 323


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -3

Query: 368 KSGRRXESXXKSSPQGNSLMNLSAPSTRLPNFLDISLLPSPRNPRTH 228
           KSG+R        P G  L+ +  P      +L +    SP +  TH
Sbjct: 625 KSGKRNVKPVDPDPHGQKLIQVEEPMAEASKYLRLLQKHSPNSLETH 671


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/34 (29%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 335  SSPQGNSLMNLSAPSTRLPNFL-DISLLPSPRNP 237
            S+P G  +M +S+   +LP++L ++  +P+ ++P
Sbjct: 1951 SNPMGRDIMGISSSENKLPHWLRNVVTVPTVKSP 1984


>At5g38550.1 68418.m04661 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 594

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +2

Query: 26  NEHLTTAQEYATNDNEKNMLLHYVKSFKEGDLSEHKEGSRFWIRDKGPIIETYQGFIE 199
           NE+L   + Y  + +E    LH+  +     +  +K+G +F +   G  I  + G+ +
Sbjct: 224 NEYLVYVEGYYDDASETIQGLHFQTNLNNPVMMGYKKGRKFLLASNGNKIIGFHGYAD 281


>At5g38540.1 68418.m04660 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 495

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +2

Query: 26  NEHLTTAQEYATNDNEKNMLLHYVKSFKEGDLSEHKEGSRFWIRDKGPIIETYQGFIE 199
           NE+L   + Y  + +E    LH+  +     +  +K+G +F +   G  I  + G+ +
Sbjct: 172 NEYLVYVEGYYDDASETIQGLHFQTNLNNPVMMGYKKGRKFLLASNGNKIIGFHGYAD 229


>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
           identical to telomerase reverse transcriptase
           [Arabidopsis thaliana] GI:5880683
          Length = 1123

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 45  LRSTQQMIMRRTCSCIMLKVLKKAI 119
           +RSTQQM+  +  S + L+++KK +
Sbjct: 531 IRSTQQMLCTKWISWLFLEIVKKLV 555


>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
           similarity to myosin heavy chain [Rana catesbeiana]
           GI:4249699; contains Pfam profile PF00787: PX domain
          Length = 755

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 8   HELKIVNEHLTTAQEYATNDNEKNMLLHYVKSFKEGDLSEHKEGSRFWIRDKGPI 172
           + +K    H+ TA E    +N+  MLL  +   +E   + HKE     ++ K  +
Sbjct: 513 NSIKDEKTHIETANESLVQENQ--MLLQQINDIRENFENFHKEHEELEVKAKAEL 565


>At1g50040.1 68414.m05615 expressed protein
          Length = 460

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 238 GFRGDGNKEMSKKFGSLVDGAERFIK 315
           GFR  G++ +S    S+  G E+F K
Sbjct: 213 GFRNSGDRNLSLSLSSVTSGKEQFSK 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,625,406
Number of Sequences: 28952
Number of extensions: 140916
Number of successful extensions: 429
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)