Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0522
         (453 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.1  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 240 WYSGPREIRRYQKSTELLIRKLPFQRLVRE 329
           W+  P E+  + KS   L +     R+VRE
Sbjct: 309 WHETPEEMMEFLKSVFRLDQDQCSHRIVRE 338


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 240 WYSGPREIRRYQKSTELLIRKLPFQRLVRE 329
           W+  P E+  + KS   L +     R+VRE
Sbjct: 542 WHETPEEMMEFLKSVFRLDQDQCSHRIVRE 571


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 240 WYSGPREIRRYQKSTELLIRKLPFQRLVRE 329
           W+  P E+  + KS   L +     R+VRE
Sbjct: 542 WHETPEEMMEFLKSVFRLDQDQCSHRIVRE 571


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 118 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKP 225
           T+ + R S+G ++PR +   K   K    T   K+P
Sbjct: 197 TRYSDRPSSG-RSPRTRRVKKPGAKQGAPTAEEKRP 231


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 300  KLPFQRLVREIAQDFKTDLRFQSAASELSRRQAEA 404
            K  F   V+E+ + FK      SAA   SRR  +A
Sbjct: 1962 KSAFADFVKELHEAFKPKGWLLSAAVSPSRRVVDA 1996


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 210 WSQEATSLSPWYSGPREIRRYQK 278
           W+  A S SP Y  P +   Y+K
Sbjct: 220 WAGFADSHSPLYKRPHDQWAYEK 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,250
Number of Sequences: 336
Number of extensions: 1663
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)