Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0522
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 110 1e-25
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 110 1e-25
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 110 1e-25
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 83 3e-17
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 0.58
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 27 1.3
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 2.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 3.1
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 25 5.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 7.2
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 24 9.5
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 110 bits (264), Expect = 1e-25
Identities = 54/65 (83%), Positives = 56/65 (86%)
Frame = +3
Query: 255 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAASELSRRQAEAYLVGLFXDTN 434
REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A + EAYLV LF DTN
Sbjct: 50 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTN 109
Query: 435 LCAIH 449
LCAIH
Sbjct: 110 LCAIH 114
Score = 99 bits (238), Expect = 2e-22
Identities = 46/49 (93%), Positives = 49/49 (100%)
Frame = +1
Query: 109 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL 255
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVAL
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVAL 49
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 110 bits (264), Expect = 1e-25
Identities = 54/65 (83%), Positives = 56/65 (86%)
Frame = +3
Query: 255 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAASELSRRQAEAYLVGLFXDTN 434
REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A + EAYLV LF DTN
Sbjct: 50 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTN 109
Query: 435 LCAIH 449
LCAIH
Sbjct: 110 LCAIH 114
Score = 99 bits (238), Expect = 2e-22
Identities = 46/49 (93%), Positives = 49/49 (100%)
Frame = +1
Query: 109 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL 255
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVAL
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVAL 49
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 110 bits (264), Expect = 1e-25
Identities = 54/65 (83%), Positives = 56/65 (86%)
Frame = +3
Query: 255 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAASELSRRQAEAYLVGLFXDTN 434
REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A + EAYLV LF DTN
Sbjct: 50 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTN 109
Query: 435 LCAIH 449
LCAIH
Sbjct: 110 LCAIH 114
Score = 99 bits (238), Expect = 2e-22
Identities = 46/49 (93%), Positives = 49/49 (100%)
Frame = +1
Query: 109 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL 255
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVAL
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVAL 49
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 82.6 bits (195), Expect = 3e-17
Identities = 44/78 (56%), Positives = 57/78 (73%), Gaps = 6/78 (7%)
Frame = +3
Query: 237 PWYSGPREIRRYQKSTELLIRKLPFQRLVREIAQD----FKTD--LRFQSAASELSRRQA 398
P + REIR+YQ+ST+LLI++LPF R+VREI+ + F TD LR+QS A + + A
Sbjct: 24 PGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAA 83
Query: 399 EAYLVGLFXDTNLCAIHA 452
EA+LV LF DTNLCAIHA
Sbjct: 84 EAFLVHLFEDTNLCAIHA 101
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 0.58
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 252 PREIRRYQKSTELLIRKLPFQR 317
PRE+++ ++ EL++ LPFQR
Sbjct: 341 PREVKQIEQPKELVLNLLPFQR 362
>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 163
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 309 FQRLVREIAQDFKTDLRFQSAASELS 386
F+ LV+E Q+F DL FQ+ EL+
Sbjct: 21 FKMLVQEYLQEFGMDLTFQNVDDELA 46
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 104 KQWLVLNKQPVNLLEVKLRVNNLLQ 178
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 240 WYSGPREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAASELS--RRQAEAYLV 413
WY PR+I+R+ T LL + Q+ K ++ +S L + QA++Y
Sbjct: 149 WYFRPRDIQRHLTDTRLLFASMHSDIYNIGSVQE-KCTVKHRSQIENLDEYKSQAKSYYF 207
Query: 414 GLFXDTNL 437
D N+
Sbjct: 208 DRLFDQNI 215
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 299 TDKQLSRLLITTNFTRATVPGR*RCGFLTPPVLGAD 192
T KQ +R T R TVP F +PP L D
Sbjct: 268 TKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 225 TSLSPWYSGPREIRRYQKSTELLIRKL--PFQRLVREIAQDFKTDLRFQSAASELSR 389
+S+ PWY GP + Y S L RK+ PF + +D T L + A + +
Sbjct: 440 SSVCPWYQGP-SLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKK 495
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 407 ISLSLPPGELRCGRLKTQI 351
+ ++L PGE +C RLK +I
Sbjct: 134 VDITLSPGEEKCFRLKRRI 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,484
Number of Sequences: 5004
Number of extensions: 28015
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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