Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0522
         (453 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     116   5e-28
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       114   1e-27
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   5.0  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  116 bits (278), Expect = 5e-28
 Identities = 57/66 (86%), Positives = 59/66 (89%)
 Frame = +3

Query: 255 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAASELSRRQAEAYLVGLFXDTN 434
           REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAA    +  +EAYLVGLF DTN
Sbjct: 50  REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTN 109

Query: 435 LCAIHA 452
           LCAIHA
Sbjct: 110 LCAIHA 115



 Score =  103 bits (248), Expect = 2e-24
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +1

Query: 109 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL 255
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL 49


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  114 bits (275), Expect = 1e-27
 Identities = 56/66 (84%), Positives = 59/66 (89%)
 Frame = +3

Query: 255 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAASELSRRQAEAYLVGLFXDTN 434
           REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A    +  +EAYLVGLF DTN
Sbjct: 48  REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN 107

Query: 435 LCAIHA 452
           LCAIHA
Sbjct: 108 LCAIHA 113



 Score = 96.7 bits (230), Expect = 3e-22
 Identities = 45/47 (95%), Positives = 46/47 (97%)
 Frame = +1

Query: 115 RTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL 255
           RTKQTARKSTGGKAPRKQLA KAARKSAP+TGGVKKPHRYRPGTVAL
Sbjct: 1   RTKQTARKSTGGKAPRKQLARKAARKSAPATGGVKKPHRYRPGTVAL 47


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 371 GRLKTQISFEILSDFSHKTLERQLTDKQLSRLLITTN 261
           G + T  +F +LSD +   L    TD QLS + +  N
Sbjct: 803 GTITTGSAFVLLSDKTSLRLITTTTDHQLSEVELRPN 839


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,806
Number of Sequences: 2352
Number of extensions: 7097
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)