Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0518
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   1.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   3.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.9  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 27  GLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNITNY 161
           G++  P  C V+ TC+  G      ++   H +  + + +NI NY
Sbjct: 447 GIVRDPSDCSVYYTCVSDGSKLVSIQRKCNHGLVYDLE-LNICNY 490


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 267 YWFWELCYTFSG 232
           +W W L Y F G
Sbjct: 207 HWHWHLVYPFEG 218


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 107 FFKNCWKDTGINTSVENMTKHR 42
           FFK   +DT I   + NM K++
Sbjct: 378 FFKKVIRDTPIVAIISNMYKNQ 399


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 38  RSGALSCFQHLY*FRYLSN 94
           RS  L C +HL+ F+ + +
Sbjct: 372 RSIGLKCLEHLFFFKLIGD 390


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,548
Number of Sequences: 336
Number of extensions: 1886
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)