Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0518
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491...    29   2.0  
02_02_0516 + 11116746-11116998,11117547-11117671,11118363-111188...    28   3.5  

>07_01_0657 -
           4915264-4915386,4915586-4915714,4917773-4917859,
           4918220-4918368,4918498-4918555,4918632-4920614,
           4922064-4922123
          Length = 862

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 27  GLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMN 149
           G ++ P  C V + C+  G+F  +    L+H +++  D +N
Sbjct: 123 GYVITPCSCPVGSDCVCDGLFNLLEDNHLIHNVNQAPDVVN 163


>02_02_0516 +
           11116746-11116998,11117547-11117671,11118363-11118855,
           11118996-11119201
          Length = 358

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 288 PLPDLKPYWFWELCYT 241
           P  + K YWFW+L YT
Sbjct: 311 PCQNRKQYWFWDLSYT 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,274
Number of Sequences: 37544
Number of extensions: 183915
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)